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lines changed Original file line number Diff line number Diff line change @@ -348,6 +348,10 @@ def init_syn_preprocessing_wf(
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auto_bold_nss = False ,
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t1w_inversion = False ,
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sd_prior = True ,
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+ n4_iterations = (50 ,) * 5 ,
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+ n4_shrink_factor = 4 ,
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+ calculate_n4_spline_grid = False ,
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+ ** kwargs ,
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):
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"""
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Prepare EPI references and co-registration to anatomical for SyN.
@@ -470,6 +474,9 @@ def init_syn_preprocessing_wf(
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epi_reference_wf = init_epi_reference_wf (
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omp_nthreads = omp_nthreads ,
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auto_bold_nss = auto_bold_nss ,
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+ n4_iterations = n4_iterations ,
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+ n4_shrink_factor = n4_shrink_factor ,
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+ calculate_bspline_grid = calculate_n4_spline_grid ,
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)
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epi_brain = pe .Node (BrainExtraction (), name = 'epi_brain' )
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merge_output = pe .Node (
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