Fix paths to metadata files.

Author: tsalo

sdcflows/utils/wrangler.py

@@ -347,7 +347,6 @@ def find_estimators(
     base_entities = {
         "subject": subject,
         "extension": [".nii", ".nii.gz"],
-        "part": ["mag", None],
         "scope": "raw",  # Ensure derivatives are not captured
     }
 
@@ -372,7 +371,9 @@ def find_estimators(
         # flatten lists from json (tupled in pybids for hashing), then unique
         b0_ids = reduce(
             set.union,
-            (listify(ids) for ids in layout.get_B0FieldIdentifiers(**base_entities)),
+            (listify(ids) for ids in layout.get_B0FieldIdentifiers(
+                session=sessions, **base_entities)
+            ),
             set()
         )
 

sdcflows/workflows/fit/tests/test_medic.py

@@ -38,7 +38,8 @@ def test_medic(tmpdir, datadir, workdir, outdir):
     magnitude_files = sorted(datadir.glob(pattern))
     phase_files = [f.with_name(f.name.replace("part-mag", "part-phase")) for f in magnitude_files]
     metadata_dicts = [
-        loads(Path(f.name.replace('.nii.gz', '.json')).read_text()) for f in magnitude_files
+        loads(Path(f.with_name(f.name.replace('.nii.gz', '.json'))).read_text())
+        for f in magnitude_files
     ]
 
     wf = Workflow(name=f"medic_{magnitude_files[0].name.replace('.nii.gz', '').replace('-', '_')}")