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CI: Update CI to do build/version check/test
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‎.github/workflows/pythonpackage.yml

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contents: read
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jobs:
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job_metadata:
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if: github.repository == 'nipreps/sdcflows'
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runs-on: ubuntu-latest
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outputs:
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commit_message: ${{ steps.get_commit_message.outputs.commit_message }}
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version: ${{ steps.show_version.outputs.version }}
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steps:
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- name: Checkout
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uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- name: Print head git commit message
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id: get_commit_message
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run: |
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if [[ -z "$COMMIT_MSG" ]]; then
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COMMIT_MSG=$(git show -s --format=%s $REF)
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fi
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echo commit_message=$COMMIT_MSG | tee -a $GITHUB_OUTPUT
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env:
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COMMIT_MSG: ${{ github.event.head_commit.message }}
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REF: ${{ github.event.pull_request.head.sha }}
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- name: Detect version
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id: show_version
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run: |
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if [[ "$GITHUB_REF" == refs/tags/* ]]; then
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VERSION=${GITHUB_REF##*/}
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else
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pip install setuptools_scm
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VERSION=$( python -m setuptools_scm )
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fi
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echo version=$VERSION | tee -a $GITHUB_OUTPUT
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build:
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if: github.repository == 'nipreps/sdcflows'
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v4
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with:
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fetch-depth: 0
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- name: Set up Python 3
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uses: actions/setup-python@v4
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with:
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python-version: 3
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- name: Display Python version
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run: python -c "import sys; print(sys.version)"
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- name: Build niworkflows
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run: pipx run build
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- name: Check distributions
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run: pipx run twine check dist/*
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- uses: actions/upload-artifact@v3
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with:
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name: dist
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path: dist/
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test:
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if: "!startsWith(github.ref, 'refs/tags/') && !contains(github.event.head_commit.message, '[skip ci]')"
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needs: [build, job_metadata]
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runs-on: ubuntu-latest
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strategy:
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matrix:
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python-version: ["3.8", "3.9", "3.10"]
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pip: ["pip==21.2", "pip~=22.0"]
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python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
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install: [repo]
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include:
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- python-version: "3.11"
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install: sdist
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- python-version: "3.11"
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install: wheel
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- python-version: "3.11"
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install: editable
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env:
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INSTALL_TYPE: ${{ matrix.install }}
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steps:
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- uses: actions/checkout@v3
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- name: Fetch all tags (for setuptools_scm to work)
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run: |
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/usr/bin/git -c protocol.version=2 fetch --tags --prune --unshallow origin
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- uses: actions/checkout@v4
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if: matrix.install == 'repo' || matrix.install == 'editable'
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with:
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fetch-depth: 0
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- name: Set up Python ${{ matrix.python-version }}
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uses: actions/setup-python@v4
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with:
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python-version: ${{ matrix.python-version }}
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- uses: actions/cache@v3
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- name: Fetch packages
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if: matrix.install == 'sdist' || matrix.install == 'wheel'
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uses: actions/download-artifact@v3
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with:
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path: $HOME/.cache/pip
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key: pip-cache-v1
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restore-keys: |
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pip-cache-
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- name: Build in confined environment and interpolate version
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name: dist
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path: dist/
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- name: Select archive
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run: |
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python -m venv /tmp/buildenv
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source /tmp/buildenv/bin/activate
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python -m pip install -U build "setuptools >= 45" wheel "setuptools_scm >= 6.2" \
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setuptools_scm_git_archive pip twine docutils
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python -m build -s -w
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python -m twine check dist/sdcflows-*
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mv dist /tmp/package
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rm -rf sdcflows.egg-info/
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# Interpolate version
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if [[ "$GITHUB_REF" == refs/tags/* ]]; then
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TAG=${GITHUB_REF##*/}
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if [ "$INSTALL_TYPE" = "sdist" ]; then
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ARCHIVE=$( ls dist/*.tar.gz )
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elif [ "$INSTALL_TYPE" = "wheel" ]; then
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ARCHIVE=$( ls dist/*.whl )
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elif [ "$INSTALL_TYPE" = "repo" ]; then
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ARCHIVE="."
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elif [ "$INSTALL_TYPE" = "editable" ]; then
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ARCHIVE="-e ."
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fi
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THISVERSION=$( python -m setuptools_scm )
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THISVERSION=${TAG:-$THISVERSION}
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echo "Expected VERSION: \"${THISVERSION}\""
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echo "THISVERSION=${THISVERSION}" >> $GITHUB_ENV
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- name: Install in confined environment [pip]
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run: |
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python -m venv /tmp/pip
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source /tmp/pip/bin/activate
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python -m pip install -U "setuptools >= 45" "setuptools_scm >= 6.2" "${{ matrix.pip }}"
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python -m pip install .
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INSTALLED_VERSION=$(python -c 'import sdcflows as sdc; print(sdc.__version__, end="")')
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echo "VERSION: \"${THISVERSION}\""
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echo "INSTALLED: \"${INSTALLED_VERSION}\""
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test "${INSTALLED_VERSION}" = "${THISVERSION}"
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- name: Install in confined environment [sdist]
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run: |
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python -m venv /tmp/install_sdist
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source /tmp/install_sdist/bin/activate
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python -m pip install -U "setuptools >= 45" "${{ matrix.pip }}"
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python -m pip install /tmp/package/sdcflows*.tar.gz
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INSTALLED_VERSION=$(python -c 'import sdcflows as sdc; print(sdc.__version__, end="")')
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echo "VERSION: \"${THISVERSION}\""
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echo "INSTALLED: \"${INSTALLED_VERSION}\""
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test "${INSTALLED_VERSION}" = "${THISVERSION}"
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- name: Install in confined environment [wheel]
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echo "ARCHIVE=$ARCHIVE" | tee -a $GITHUB_ENV
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- name: Install package
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run: python -m pip install $ARCHIVE
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- name: Check version
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run: |
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python -m venv /tmp/install_wheel
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source /tmp/install_wheel/bin/activate
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python -m pip install -U "setuptools >= 45" "${{ matrix.pip }}"
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python -m pip install /tmp/package/sdcflows*.whl
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INSTALLED_VERSION=$(python -c 'import sdcflows as sdc; print(sdc.__version__, end="")')
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INSTALLED_VERSION=$(python -c 'import sdcflows; print(sdcflows.__version__, end="")')
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echo "INSTALLED: \"${INSTALLED_VERSION}\""
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test "${INSTALLED_VERSION}" = "${THISVERSION}"
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test "${INSTALLED_VERSION}" = "${VERSION}"
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env:
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VERSION: ${{ needs.job_metadata.outputs.version }}
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- name: Install test dependencies
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run: python -m pip install "sdcflows[tests]"
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- name: Run tests
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run: pytest -sv --doctest-modules --cov sdcflows --pyargs sdcflows
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- uses: codecov/codecov-action@v3
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name: Submit to CodeCov
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flake8:
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v3
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- uses: actions/checkout@v4
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- name: Set up Python 3
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uses: actions/setup-python@v4
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with:
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python-version: 3
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- run: pip install flake8
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- run: flake8 sdcflows/
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- run: pipx run flake8 sdcflows/

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