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It needs a third session!
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‎sdcflows/utils/tests/test_wrangler.py‎

Lines changed: 162 additions & 36 deletions
Original file line numberDiff line numberDiff line change
@@ -435,12 +435,12 @@ def gen_layout(bids_dir, database_dir=None):
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"TotalReadoutTime": 0.5,
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"PhaseEncodingDirection": "j",
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"IntendedFor": [
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"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-1_part-mag_bold.nii.gz",
439-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-1_part-phase_bold.nii.gz",
440-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-2_part-mag_bold.nii.gz",
441-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-2_part-phase_bold.nii.gz",
442-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-3_part-mag_bold.nii.gz",
443-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-3_part-phase_bold.nii.gz",
438+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-1_part-mag_bold.nii.gz",
439+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-1_part-phase_bold.nii.gz",
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"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-2_part-mag_bold.nii.gz",
441+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-2_part-phase_bold.nii.gz",
442+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-3_part-mag_bold.nii.gz",
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"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-3_part-phase_bold.nii.gz",
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],
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},
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},
@@ -455,12 +455,12 @@ def gen_layout(bids_dir, database_dir=None):
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"TotalReadoutTime": 0.5,
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"PhaseEncodingDirection": "j",
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"IntendedFor": [
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"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-1_part-mag_bold.nii.gz",
459-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-1_part-phase_bold.nii.gz",
460-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-2_part-mag_bold.nii.gz",
461-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-2_part-phase_bold.nii.gz",
462-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-3_part-mag_bold.nii.gz",
463-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-3_part-phase_bold.nii.gz",
458+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-1_part-mag_bold.nii.gz",
459+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-1_part-phase_bold.nii.gz",
460+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-2_part-mag_bold.nii.gz",
461+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-2_part-phase_bold.nii.gz",
462+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-3_part-mag_bold.nii.gz",
463+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-3_part-phase_bold.nii.gz",
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],
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},
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},
@@ -475,12 +475,12 @@ def gen_layout(bids_dir, database_dir=None):
475475
"TotalReadoutTime": 0.5,
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"PhaseEncodingDirection": "j",
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"IntendedFor": [
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"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-1_part-mag_bold.nii.gz",
479-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-1_part-phase_bold.nii.gz",
480-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-2_part-mag_bold.nii.gz",
481-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-2_part-phase_bold.nii.gz",
482-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-3_part-mag_bold.nii.gz",
483-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-3_part-phase_bold.nii.gz",
478+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-1_part-mag_bold.nii.gz",
479+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-1_part-phase_bold.nii.gz",
480+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-2_part-mag_bold.nii.gz",
481+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-2_part-phase_bold.nii.gz",
482+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-3_part-mag_bold.nii.gz",
483+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-3_part-phase_bold.nii.gz",
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],
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},
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},
@@ -495,12 +495,12 @@ def gen_layout(bids_dir, database_dir=None):
495495
"TotalReadoutTime": 0.5,
496496
"PhaseEncodingDirection": "j",
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"IntendedFor": [
498-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-1_part-mag_bold.nii.gz",
499-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-1_part-phase_bold.nii.gz",
500-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-2_part-mag_bold.nii.gz",
501-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-2_part-phase_bold.nii.gz",
502-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-3_part-mag_bold.nii.gz",
503-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-3_part-phase_bold.nii.gz",
498+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-1_part-mag_bold.nii.gz",
499+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-1_part-phase_bold.nii.gz",
500+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-2_part-mag_bold.nii.gz",
501+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-2_part-phase_bold.nii.gz",
502+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-3_part-mag_bold.nii.gz",
503+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-3_part-phase_bold.nii.gz",
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],
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},
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},
@@ -515,12 +515,12 @@ def gen_layout(bids_dir, database_dir=None):
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"TotalReadoutTime": 0.5,
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"PhaseEncodingDirection": "j",
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"IntendedFor": [
518-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-1_part-mag_bold.nii.gz",
519-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-1_part-phase_bold.nii.gz",
520-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-2_part-mag_bold.nii.gz",
521-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-2_part-phase_bold.nii.gz",
522-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-3_part-mag_bold.nii.gz",
523-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-3_part-phase_bold.nii.gz",
518+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-1_part-mag_bold.nii.gz",
519+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-1_part-phase_bold.nii.gz",
520+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-2_part-mag_bold.nii.gz",
521+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-2_part-phase_bold.nii.gz",
522+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-3_part-mag_bold.nii.gz",
523+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-3_part-phase_bold.nii.gz",
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],
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},
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},
@@ -535,12 +535,138 @@ def gen_layout(bids_dir, database_dir=None):
535535
"TotalReadoutTime": 0.5,
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"PhaseEncodingDirection": "j",
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"IntendedFor": [
538-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-1_part-mag_bold.nii.gz",
539-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-1_part-phase_bold.nii.gz",
540-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-2_part-mag_bold.nii.gz",
541-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-2_part-phase_bold.nii.gz",
542-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-3_part-mag_bold.nii.gz",
543-
"bids::sub-01/ses-01/func/sub-01_ses-02_task-rest_echo-3_part-phase_bold.nii.gz",
538+
"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-1_part-mag_bold.nii.gz",
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"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-1_part-phase_bold.nii.gz",
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"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-2_part-mag_bold.nii.gz",
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"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-2_part-phase_bold.nii.gz",
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"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-3_part-mag_bold.nii.gz",
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"bids::sub-01/ses-02/func/sub-01_ses-02_task-rest_echo-3_part-phase_bold.nii.gz",
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],
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},
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},
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],
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},
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{
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"session": "03",
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"anat": [{"suffix": "T1w", "metadata": {"EchoTime": 1}}],
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"func": [
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{
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"task": "rest",
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"echo": "1",
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"part": "mag",
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"suffix": "bold",
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"metadata": {
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"EchoTime": 0.0142,
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"RepetitionTime": 0.8,
561+
"TotalReadoutTime": 0.5,
562+
"PhaseEncodingDirection": "j",
563+
"IntendedFor": [
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-1_part-mag_bold.nii.gz",
565+
"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-1_part-phase_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-2_part-mag_bold.nii.gz",
567+
"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-2_part-phase_bold.nii.gz",
568+
"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-3_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-3_part-phase_bold.nii.gz",
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],
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},
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},
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{
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"task": "rest",
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"echo": "1",
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"part": "phase",
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"suffix": "bold",
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"metadata": {
579+
"EchoTime": 0.0142,
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"RepetitionTime": 0.8,
581+
"TotalReadoutTime": 0.5,
582+
"PhaseEncodingDirection": "j",
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"IntendedFor": [
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-1_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-1_part-phase_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-2_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-2_part-phase_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-3_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-3_part-phase_bold.nii.gz",
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],
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},
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},
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{
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"task": "rest",
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"echo": "2",
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"part": "mag",
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"suffix": "bold",
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"metadata": {
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"EchoTime": 0.03893,
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"RepetitionTime": 0.8,
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"TotalReadoutTime": 0.5,
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"PhaseEncodingDirection": "j",
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"IntendedFor": [
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-1_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-1_part-phase_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-2_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-2_part-phase_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-3_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-3_part-phase_bold.nii.gz",
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],
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},
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},
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{
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"task": "rest",
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"echo": "2",
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"part": "phase",
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"suffix": "bold",
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"metadata": {
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"EchoTime": 0.03893,
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"RepetitionTime": 0.8,
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"TotalReadoutTime": 0.5,
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"PhaseEncodingDirection": "j",
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"IntendedFor": [
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-1_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-1_part-phase_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-2_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-2_part-phase_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-3_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-3_part-phase_bold.nii.gz",
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],
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},
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},
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{
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"task": "rest",
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"echo": "3",
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"part": "mag",
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"suffix": "bold",
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"metadata": {
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"EchoTime": 0.06366,
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"RepetitionTime": 0.8,
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"TotalReadoutTime": 0.5,
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"PhaseEncodingDirection": "j",
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"IntendedFor": [
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-1_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-1_part-phase_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-2_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-2_part-phase_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-3_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-3_part-phase_bold.nii.gz",
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],
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},
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},
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{
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"task": "rest",
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"echo": "3",
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"part": "phase",
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"suffix": "bold",
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"metadata": {
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"EchoTime": 0.06366,
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"RepetitionTime": 0.8,
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"TotalReadoutTime": 0.5,
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"PhaseEncodingDirection": "j",
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"IntendedFor": [
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-1_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-1_part-phase_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-2_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-2_part-phase_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-3_part-mag_bold.nii.gz",
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"bids::sub-01/ses-03/func/sub-01_ses-03_task-rest_echo-3_part-phase_bold.nii.gz",
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],
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},
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},

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