rf: Transition from niworkflows reporting interfaces

Author: effigies

sdcflows/tests/test_transform.py

@@ -29,6 +29,7 @@
 from nitransforms.linear import LinearTransformsMapping
 from skimage.morphology import ball
 import scipy.ndimage as nd
+from nireports.interfaces.reporting.base import SimpleBeforeAfterRPT as SimpleBeforeAfter
 
 from sdcflows import transform as tf
 from sdcflows.interfaces.bspline import bspline_grid
@@ -120,10 +121,6 @@ def test_displacements_field(tmpdir, testdata_dir, outdir, pe_dir, rotation, fli
     assert np.all((np.sqrt(((ours - theirs) ** 2).sum()) / ours.size) < 1e-1)
 
     if outdir:
-        from niworkflows.interfaces.reportlets.registration import (
-            SimpleBeforeAfterRPT as SimpleBeforeAfter,
-        )
-
         orientation = "".join([ax[bool(f)] for ax, f in zip(("RL", "AP", "SI"), flip)])
 
         SimpleBeforeAfter(
@@ -204,10 +201,6 @@ def test_apply_transform(tmpdir, outdir, datadir, pe0, hmc, fmap):
         error = np.sqrt(((corrected.dataobj - realigned.dataobj) ** 2))
 
         if outdir:
-            from niworkflows.interfaces.reportlets.registration import (
-                SimpleBeforeAfterRPT as SimpleBeforeAfter,
-            )
-
             # Do not include the first volume in the average to enhance differences
             realigned_data = np.asanyarray(corrected.dataobj)[..., 1:].mean(-1)
             realigned_data[realigned_data < 0] = 0
@@ -241,10 +234,6 @@ def test_apply_transform(tmpdir, outdir, datadir, pe0, hmc, fmap):
         error_margin = 200  # test oracle is pretty bad here - needs revision.
 
         if outdir:
-            from niworkflows.interfaces.reportlets.registration import (
-                SimpleBeforeAfterRPT as SimpleBeforeAfter,
-            )
-
             # Do not include the first volume in the average to enhance differences
             realigned_data = np.asanyarray(corrected.dataobj)[..., 1:].mean(-1)
             realigned_data[realigned_data < 0] = 0

sdcflows/workflows/apply/tests/test_correction.py

@@ -25,6 +25,7 @@
 import pytest
 from nipype.pipeline import engine as pe
 from nipype.interfaces import utility as niu
+from nireports.interfaces.reporting.base import SimpleBeforeAfterRPT as SimpleBeforeAfter
 from sdcflows.workflows.apply.correction import init_unwarp_wf
 
 
@@ -58,9 +59,6 @@ def test_unwarp_wf(tmpdir, datadir, workdir, outdir, with_affine):
         )
 
     if outdir:
-        from niworkflows.interfaces.reportlets.registration import (
-            SimpleBeforeAfterRPT as SimpleBeforeAfter,
-        )
         from ...outputs import DerivativesDataSink
         from ....interfaces.reportlets import FieldmapReportlet
 

sdcflows/workflows/apply/tests/test_registration.py

@@ -26,6 +26,7 @@
 
 from nipype.pipeline import engine as pe
 from nipype.interfaces import utility as niu
+from nireports.interfaces.reporting.base import SimpleBeforeAfterRPT as SimpleBeforeAfter
 
 from ...fit.fieldmap import init_magnitude_wf
 from ..registration import init_coeff2epi_wf
@@ -70,9 +71,6 @@ def test_registration_wf(tmpdir, datadir, workdir, outdir):
     # fmt: on
 
     if outdir:
-        from niworkflows.interfaces.reportlets.registration import (
-            SimpleBeforeAfterRPT as SimpleBeforeAfter,
-        )
         from ...outputs import DerivativesDataSink
 
         report = pe.Node(

sdcflows/workflows/tests/test_ancillary.py

@@ -24,7 +24,7 @@
 import pytest
 from nipype.pipeline import engine as pe
 from nipype.interfaces import utility as niu
-from niworkflows.interfaces.reportlets.masks import SimpleShowMaskRPT
+from nireports.interfaces.reporting.masks import SimpleShowMaskRPT
 from ..ancillary import init_brainextraction_wf
 
 

sdcflows/workflows/tests/test_integration.py

@@ -21,6 +21,7 @@
 #     https://www.nipreps.org/community/licensing/
 #
 """Test the base workflow."""
+
 from pathlib import Path
 import json
 import pytest
@@ -31,7 +32,7 @@
 from sdcflows.interfaces.reportlets import FieldmapReportlet
 from sdcflows.workflows.apply import correction as swac
 from sdcflows.workflows.apply import registration as swar
-from niworkflows.interfaces.reportlets.registration import (
+from nireports.interfaces.reporting.base import (
     SimpleBeforeAfterRPT as SimpleBeforeAfter,
 )