manually undo accidental linting

Author: psadil

sdcflows/utils/epimanip.py

@@ -194,7 +194,7 @@ def get_trt(in_meta, in_file=None):
 
     # npe = N voxels PE direction
     pe_index = "ijk".index(in_meta["PhaseEncodingDirection"][0])
-    npe = nb.loadsave.load(in_file).shape[pe_index]
+    npe = nb.load(in_file).shape[pe_index]
 
     # Use case 2: EES is defined
     ees = in_meta.get("EffectiveEchoSpacing")
@@ -255,9 +255,7 @@ def epi_mask(in_file, out_file=None):
     maxnorm = np.percentile(closed[closed > 0], 90)
     closed = np.clip(closed, a_min=0.0, a_max=maxnorm)
     # Calculate index of center of masses
-    cm = tuple(
-        np.round(ndimage.measurements.center_of_mass(closed)).astype(int)
-    )
+    cm = tuple(np.round(ndimage.measurements.center_of_mass(closed)).astype(int))
     # Erode the picture of the brain by a lot
     eroded = ndimage.grey_erosion(closed, structure=ball(5))
     # Calculate the residual
@@ -273,8 +271,6 @@ def epi_mask(in_file, out_file=None):
     hdr = img.header.copy()
     hdr.set_data_dtype("uint8")
     nb.Nifti1Image(
-        ndimage.binary_dilation(labels == 2, ball(2)).astype("uint8"),
-        img.affine,
-        hdr,
+        ndimage.binary_dilation(labels == 2, ball(2)).astype("uint8"), img.affine, hdr
     ).to_filename(out_file)
     return out_file