maint: ensure nothing is imported/remains from MRIQC

Author: oesteban

pyproject.toml

@@ -53,7 +53,7 @@ doc = [
     "nbsphinx",
     "nibabel",
     "nipype >= 1.5.1",
-    "niworkflows >= 1.7.0",
+    "niworkflows @ git+https://github.com/nipreps/niworkflows.git@master",
     "numpy",
     "packaging",
     "pandoc",

sdcflows/cli/main.py

@@ -39,15 +39,15 @@ def main(argv=None):
     parse_args(argv)
 
     if config.execution.pdb:
-        from mriqc.utils.debug import setup_exceptionhook
+        from niworkflows.utils.debug import setup_exceptionhook
 
         setup_exceptionhook()
         config.nipype.plugin = "Linear"
 
     # CRITICAL Save the config to a file. This is necessary because the execution graph
     # is built as a separate process to keep the memory footprint low. The most
     # straightforward way to communicate with the child process is via the filesystem.
-    # The config file name needs to be unique, otherwise multiple mriqc instances
+    # The config file name needs to be unique, otherwise multiple sdcflows instances
     # will create write conflicts.
     config_file = mktemp(
         dir=config.execution.work_dir, prefix=".sdcflows.", suffix=".toml"
@@ -133,7 +133,7 @@ def main(argv=None):
 
     # CRITICAL Load the config from the file. This is necessary because the ``build_workflow``
     # function executed constrained in a process may change the config (and thus the global
-    # state of MRIQC).
+    # state of SDCFlows).
     config.load(config_file)
 
     exitcode = exitcode or (sdcflows_wf is None) * os.EX_SOFTWARE
@@ -164,10 +164,10 @@ def main(argv=None):
 
     # Clean up master process before running workflow, which may create forks
     gc.collect()
-    # run MRIQC
+    # run SDCFlows
     _plugin = config.nipype.get_plugin()
     if _pool:
-        from mriqc.engine.plugin import MultiProcPlugin
+        from niworkflows.engine.plugin import MultiProcPlugin
 
         _plugin = {
             "plugin": MultiProcPlugin(

sdcflows/cli/parser.py

@@ -272,7 +272,7 @@ def _bids_filter(value):
         "--notrack",
         action="store_true",
         help="Opt-out of sending tracking information of this run to the NiPreps developers. This"
-        " information helps to improve MRIQC and provides an indicator of real world usage "
+        " information helps to improve SDCFlows and provides an indicator of real world usage "
         " crucial for obtaining funding.",
     )