fix: Adapt to transposed ndindex in nitransforms

effigies · effigies · commit e5a0ff53b49c · 2025-09-04T21:55:54.000-04:00
diff --git a/pyproject.toml b/pyproject.toml
@@ -29,7 +29,7 @@ dependencies = [
     "migas >= 0.4.0",
     "nireports >= 25.0.1",
     "niworkflows >= 1.11.0",
-    "nitransforms >= 24.1.0",
+    "nitransforms >= 25.0.1",
     "numpy >= 1.23",
     "pybids >= 0.16.4",
     "scikit-image >= 0.18",
diff --git a/sdcflows/transform.py b/sdcflows/transform.py
@@ -502,7 +502,7 @@ def apply(
         # Reference image's voxel coordinates (in voxel units)
         voxcoords = (
             nt.linear.Affine(reference=moving)
-            .reference.ndindex.reshape((ndim, *data.shape[:ndim]))
+            .reference.ndindex.T.reshape((ndim, *data.shape[:ndim]))
             .astype('float32')
         )
 

Original file line number	Diff line number	Diff line change
`@@ -502,7 +502,7 @@ def apply(`
`502`	`502`	`# Reference image's voxel coordinates (in voxel units)`
`503`	`503`	`voxcoords = (`
`504`	`504`	`nt.linear.Affine(reference=moving)`
`505`		`- .reference.ndindex.reshape((ndim, *data.shape[:ndim]))`
	`505`	`+ .reference.ndindex.T.reshape((ndim, *data.shape[:ndim]))`
`506`	`506`	`.astype('float32')`
`507`	`507`	`)`
`508`	`508`