init_3dQwarp_wf expects input that is missing from inputnode #441
Description
What happened?
I was attempting to configure a workflow with init_3dQwarp_wf but was unable to get it to run. As I understand it, this may be an issue with the workflow expecting inputnode to provide in_reference
sdcflows/sdcflows/workflows/fit/pepolar.py
Lines 384 to 385 in 2456489
but also that inputnode is not looking for in_reference
sdcflows/sdcflows/workflows/fit/pepolar.py
Lines 295 to 297 in 2456489
What command did you use?
from pathlib import Path
from sdcflows.workflows.fit import pepolar
afni_wf = pepolar.init_3dQwarp_wf(omp_nthreads=1, name="qwarp")
afni_wf.base_dir = Path.cwd()
afni_wf.inputs.inputnode.in_data = [
"sub-travel2_dir-AP_epi.nii.gz",
"sub-travel2_dir-PA_epi.nii.gz",
]
afni_wf.inputs.inputnode.metadata = [
{"PhaseEncodingDirection": "j-"},
{"PhaseEncodingDirection": "j"},
]
afni_wf.run()
# now try adding in_reference
afni_wf.inputs.inputnode.in_reference = "sub-travel2_dir-AP_epi.nii.gz"What version of the software are you running?
2.8.1
How are you running this software?
Local installation ("bare-metal")
Is your data BIDS valid?
Yes
Are you reusing any previously computed results?
No
Please copy and paste any relevant log output.
First attempt at running
AttributeError: 'DynamicTraitedSpec' object has no attribute 'in_reference'Attempt at adding in_reference
AttributeError: 'NoneType' object has no attribute 'set_input'
### Additional information / screenshots
_No response_