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fix copy of dseg.tsv following templateflow update
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smriprep/cli/run.py

Lines changed: 10 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -413,7 +413,16 @@ def _warn_redirect(message, category, filename, lineno, file=None, line=None):
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from niworkflows.utils.misc import _copy_any
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from templateflow import api
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dseg_tsv = str(api.get('fsaverage', suffix='dseg', extension=['.tsv']))
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dseg_tsv = str(
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api.get(
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'fsaverage',
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hemi=None,
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atlas=None,
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segmentation='aparc',
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suffix='dseg',
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extension=['.tsv'],
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)
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)
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_copy_any(dseg_tsv, str(Path(output_dir) / 'smriprep' / 'desc-aseg_dseg.tsv'))
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_copy_any(dseg_tsv, str(Path(output_dir) / 'smriprep' / 'desc-aparcaseg_dseg.tsv'))
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logger.log(25, 'sMRIPrep finished without errors')

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