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RF: Use first-lex
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src/smriprep/cli/run.py

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@@ -136,14 +136,14 @@ def _drop_ses(value):
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)
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g_bids.add_argument(
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'--subject-anatomical-reference',
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choices=['first-alpha', 'unbiased', 'sessionwise'],
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choices=['first-lex', 'unbiased', 'sessionwise'],
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default='first',
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help='Method to produce the reference anatomical space:'
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'\t"first-alpha" will use the first alphabetically sorted image'
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help='Method to produce the reference anatomical space:\n'
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'\t"first-lex" will use the first image in lexicographical order\n'
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'\t"unbiased" will construct an unbiased template from all images '
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'(previously "--longitudinal")'
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'(previously "--longitudinal")\n'
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'\t"sessionwise" will independently process each session. If multiple runs are '
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'found, the behavior will be similar to "first-alpha"',
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'found, the behavior will be similar to "first-lex"',
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)
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g_perfm = parser.add_argument_group('Options to handle performance')

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