chore(env): Bring env.yml into line with fmriprep

Author: effigies

env.yml

@@ -10,14 +10,16 @@ dependencies:
   # Intel Math Kernel Library for numpy
   - mkl=2023.2
   - mkl-service=2.4
+  # ANTs is linked against libitk 5.3 but does not pin the version
+  - libitk=5.3
   # Base scientific python stack; required by FSL, so pinned here
   - numpy=1.26
-  - scipy=1.11
+  - scipy=1.13
   - matplotlib=3.8
   - pandas=2.2
-  - h5py=3.10
+  - h5py=3.11
   # Dependencies compiled against numpy, best to stick with conda
-  - scikit-image=0.22
+  - scikit-image=0.23
   - scikit-learn=1.4
   # Utilities
   - graphviz=9.0
@@ -32,3 +34,5 @@ dependencies:
   - pip
   - pip:
     - -r requirements.txt
+variables:
+  FSLOUTPUTTYPE: NIFTI_GZ