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RF: More t1w->anat
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smriprep/workflows/surfaces.py

Lines changed: 5 additions & 7 deletions
Original file line numberDiff line numberDiff line change
@@ -863,8 +863,8 @@ def init_gifti_surfaces_wf(
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``lh/rh.inflated``, and ``lh/rh.white``.
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Vertex coordinates are :py:class:`transformed
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<smriprep.interfaces.NormalizeSurf>` to align with native T1w space
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when ``fsnative2t1w_xfm`` is provided.
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<smriprep.interfaces.NormalizeSurf>` to align with native anatomical space
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when ``fsnative2anat_xfm`` is provided.
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Workflow Graph
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.. workflow::
@@ -880,7 +880,7 @@ def init_gifti_surfaces_wf(
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FreeSurfer SUBJECTS_DIR
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subject_id
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FreeSurfer subject ID
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fsnative2t1w_xfm
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fsnative2anat_xfm
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LTA formatted affine transform file
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Outputs
@@ -896,7 +896,7 @@ def init_gifti_surfaces_wf(
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workflow = Workflow(name=name)
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inputnode = pe.Node(
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niu.IdentityInterface(['subjects_dir', 'subject_id', 'fsnative2t1w_xfm']),
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niu.IdentityInterface(['subjects_dir', 'subject_id', 'fsnative2anat_xfm']),
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name='inputnode',
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)
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outputnode = pe.Node(niu.IdentityInterface(['surfaces', *surfaces]), name='outputnode')
@@ -931,7 +931,7 @@ def init_gifti_surfaces_wf(
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('subject_id', 'subject_id'),
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]),
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(inputnode, fix_surfs, [
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('fsnative2t1w_xfm', 'transform_file'),
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('fsnative2anat_xfm', 'transform_file'),
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]),
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(get_surfaces, surface_list, [
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(surf, f'in{i}') for i, surf in enumerate(surfaces, start=1)
@@ -973,8 +973,6 @@ def init_gifti_morphometrics_wf(
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FreeSurfer SUBJECTS_DIR
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subject_id
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FreeSurfer subject ID
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fsnative2t1w_xfm
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LTA formatted affine transform file (inverse)
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Outputs
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-------

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