@@ -863,8 +863,8 @@ def init_gifti_surfaces_wf(
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``lh/rh.inflated``, and ``lh/rh.white``.
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Vertex coordinates are :py:class:`transformed
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- <smriprep.interfaces.NormalizeSurf>` to align with native T1w space
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- when ``fsnative2t1w_xfm `` is provided.
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+ <smriprep.interfaces.NormalizeSurf>` to align with native anatomical space
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+ when ``fsnative2anat_xfm `` is provided.
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Workflow Graph
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.. workflow::
@@ -880,7 +880,7 @@ def init_gifti_surfaces_wf(
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FreeSurfer SUBJECTS_DIR
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subject_id
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FreeSurfer subject ID
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- fsnative2t1w_xfm
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+ fsnative2anat_xfm
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LTA formatted affine transform file
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Outputs
@@ -896,7 +896,7 @@ def init_gifti_surfaces_wf(
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workflow = Workflow (name = name )
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inputnode = pe .Node (
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- niu .IdentityInterface (['subjects_dir' , 'subject_id' , 'fsnative2t1w_xfm ' ]),
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+ niu .IdentityInterface (['subjects_dir' , 'subject_id' , 'fsnative2anat_xfm ' ]),
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name = 'inputnode' ,
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)
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outputnode = pe .Node (niu .IdentityInterface (['surfaces' , * surfaces ]), name = 'outputnode' )
@@ -931,7 +931,7 @@ def init_gifti_surfaces_wf(
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('subject_id' , 'subject_id' ),
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]),
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(inputnode , fix_surfs , [
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- ('fsnative2t1w_xfm ' , 'transform_file' ),
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+ ('fsnative2anat_xfm ' , 'transform_file' ),
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]),
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(get_surfaces , surface_list , [
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(surf , f'in{ i } ' ) for i , surf in enumerate (surfaces , start = 1 )
@@ -973,8 +973,6 @@ def init_gifti_morphometrics_wf(
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FreeSurfer SUBJECTS_DIR
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subject_id
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FreeSurfer subject ID
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- fsnative2t1w_xfm
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- LTA formatted affine transform file (inverse)
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Outputs
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-------
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