FIX: Update collect_derivatives call

Author: effigies

.circleci/ds005_outputs.txt

@@ -27,6 +27,7 @@ smriprep/sub-01/anat/sub-01_hemi-L_midthickness.surf.gii
 smriprep/sub-01/anat/sub-01_hemi-L_pial.surf.gii
 smriprep/sub-01/anat/sub-01_hemi-L_space-fsLR_desc-msmsulc_sphere.surf.gii
 smriprep/sub-01/anat/sub-01_hemi-L_space-fsLR_desc-reg_sphere.surf.gii
+smriprep/sub-01/anat/sub-01_hemi-L_sphere.surf.gii
 smriprep/sub-01/anat/sub-01_hemi-L_sulc.shape.gii
 smriprep/sub-01/anat/sub-01_hemi-L_thickness.shape.gii
 smriprep/sub-01/anat/sub-01_hemi-L_white.surf.gii
@@ -37,6 +38,7 @@ smriprep/sub-01/anat/sub-01_hemi-R_midthickness.surf.gii
 smriprep/sub-01/anat/sub-01_hemi-R_pial.surf.gii
 smriprep/sub-01/anat/sub-01_hemi-R_space-fsLR_desc-msmsulc_sphere.surf.gii
 smriprep/sub-01/anat/sub-01_hemi-R_space-fsLR_desc-reg_sphere.surf.gii
+smriprep/sub-01/anat/sub-01_hemi-R_sphere.surf.gii
 smriprep/sub-01/anat/sub-01_hemi-R_sulc.shape.gii
 smriprep/sub-01/anat/sub-01_hemi-R_thickness.shape.gii
 smriprep/sub-01/anat/sub-01_hemi-R_white.surf.gii

smriprep/workflows/base.py

@@ -366,7 +366,7 @@ def init_single_subject_wf(
     std_spaces = spaces.get_spaces(nonstandard=False, dim=(3,))
     std_spaces.append("fsnative")
     for deriv_dir in derivatives:
-        deriv_cache.update(collect_derivatives(deriv_dir, subject_id, std_spaces, freesurfer))
+        deriv_cache.update(collect_derivatives(deriv_dir, subject_id, std_spaces))
 
     inputnode = pe.Node(niu.IdentityInterface(fields=["subjects_dir"]), name="inputnode")