@@ -247,22 +247,21 @@ def init_surface_recon_wf(
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)
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if not fs_reuse_base :
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+ recon_config = pe .Node (FSDetectInputs (hires_enabled = hires ), name = 'recon_config' )
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- recon_config = pe .Node (FSDetectInputs (hires_enabled = hires ), name = "recon_config" )
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-
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- fov_check = pe .Node (niu .Function (function = _check_cw256 ), name = "fov_check" )
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+ fov_check = pe .Node (niu .Function (function = _check_cw256 ), name = 'fov_check' )
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fov_check .inputs .default_flags = ['-noskullstrip' , '-noT2pial' , '-noFLAIRpial' ]
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autorecon1 = pe .Node (
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- ReconAll (directive = " autorecon1" , openmp = omp_nthreads ),
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- name = " autorecon1" ,
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+ ReconAll (directive = ' autorecon1' , openmp = omp_nthreads ),
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+ name = ' autorecon1' ,
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n_procs = omp_nthreads ,
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mem_gb = 5 ,
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)
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autorecon1 .interface ._can_resume = False
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autorecon1 .interface ._always_run = True
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- skull_strip_extern = pe .Node (FSInjectBrainExtracted (), name = " skull_strip_extern" )
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+ skull_strip_extern = pe .Node (FSInjectBrainExtracted (), name = ' skull_strip_extern' )
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autorecon_resume_wf = init_autorecon_resume_wf (omp_nthreads = omp_nthreads )
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@@ -303,10 +302,7 @@ def init_surface_recon_wf(
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])
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# fmt:on
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else :
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- fs_base_inputs = autorecon1 = pe .Node (
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- nio .FreeSurferSource (),
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- name = 'fs_base_inputs'
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- )
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+ fs_base_inputs = autorecon1 = pe .Node (nio .FreeSurferSource (), name = 'fs_base_inputs' )
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# fmt:off
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workflow .connect ([
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