CHORE: Update ruff, ignore certain rules

Author: mgxd

.github/workflows/pythonpackage.yml

@@ -119,5 +119,5 @@ jobs:
     runs-on: ubuntu-latest
     steps:
     - uses: actions/checkout@v4
-    - run: pipx run ruff smriprep
+    - run: pipx run ruff check smriprep
     - run: pipx run ruff format --diff smriprep

.pre-commit-config.yaml

@@ -11,7 +11,7 @@ repos:
       - id: check-toml
       - id: check-json
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.1.6
+    rev: v0.2.0
     hooks:
       - id: ruff
       - id: ruff-format

pyproject.toml

@@ -163,6 +163,11 @@ extend-select = [
   "PT",
   "Q",
 ]
+extend-ignore = [
+  "S311",  # We are not using random for cryptographic purposes
+  "ISC001",
+  "S603",
+]
 
 [tool.ruff.lint.flake8-quotes]
 inline-quotes = "single"