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ENH: Pass along individual outputs to surface workflow
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smriprep/workflows/surfaces.py

Lines changed: 16 additions & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -209,6 +209,13 @@ def init_surface_recon_wf(*, omp_nthreads, hires, name="surface_recon_wf"):
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"out_aseg",
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"out_aparc",
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"morphometrics",
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"midthickness",
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"pial",
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"white",
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"inflated",
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"thickness",
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"sulc",
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"curv",
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]
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),
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name="outputnode",
@@ -294,7 +301,15 @@ def init_surface_recon_wf(*, omp_nthreads, hires, name="surface_recon_wf"):
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(autorecon_resume_wf, outputnode, [('outputnode.subjects_dir', 'subjects_dir'),
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('outputnode.subject_id', 'subject_id')]),
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(gifti_surface_wf, outputnode, [('outputnode.surfaces', 'surfaces'),
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('outputnode.morphometrics', 'morphometrics')]),
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('outputnode.morphometrics', 'morphometrics'),
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('outputnode.midthickness', 'midthickness'),
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('outputnode.pial', 'pial'),
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('outputnode.white', 'white'),
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('outputnode.inflated', 'inflated'),
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('outputnode.morphometrics', 'morphometrics'),
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('outputnode.thickness', 'thickness'),
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('outputnode.sulc', 'sulc'),
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('outputnode.curv', 'curv')]),
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(t1w2fsnative_xfm, outputnode, [('out_lta', 't1w2fsnative_xfm')]),
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(fsnative2t1w_xfm, outputnode, [('out_reg_file', 'fsnative2t1w_xfm')]),
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(refine, outputnode, [('out_file', 'out_brainmask')]),

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