Update pyproject requirements and env.yml

Author: effigies

env.yml

@@ -2,29 +2,29 @@ name: smriprep
 channels:
   - https://fsl.fmrib.ox.ac.uk/fsldownloads/fslconda/public/
   - conda-forge
-# Update this ~yearly; last updated April 2023
+# Update this ~yearly; last updated March 2024
 dependencies:
-  - python=3.10
+  - python=3.11
   # Needed for svgo and bids-validator; consider moving to deno
-  - nodejs=18
+  - nodejs=20
   # Intel Math Kernel Library for numpy
-  - mkl=2022.1
+  - mkl=2023.2
   - mkl-service=2.4
   # Base scientific python stack; required by FSL, so pinned here
   - numpy=1.26
   - scipy=1.11
   - matplotlib=3.8
-  - pandas=2.1
+  - pandas=2.2
   - h5py=3.10
   # Dependencies compiled against numpy, best to stick with conda
   - scikit-image=0.22
-  - scikit-learn=1.3
+  - scikit-learn=1.4
   # Utilities
-  - graphviz=6.0
+  - graphviz=9.0
   - pandoc=3.1
   # Workflow dependencies: ANTs
-  - ants=2.5.0
-  # Workflow dependencies: FSL (versions pinned in 6.0.6.2)
+  - ants=2.5
+  # Workflow dependencies: FSL (versions pinned in 6.0.7.7)
   - fsl-bet2=2111.4
   - fsl-flirt=2111.2
   - fsl-fast4=2111.3

pyproject.toml

@@ -25,7 +25,7 @@ dependencies = [
     "matplotlib >= 2.2.0",
     "nibabel >= 4.0.1",
     "nipype >= 1.7.0",
-    "niworkflows @ git+https://github.com/nipreps/niworkflows.git@master",
+    "niworkflows >= 1.10.1",
     "numpy",
     "packaging",
     "pybids >= 0.11.1",