add circleci tests for --fs-reuse-base

Author: bpinsard

.circleci/config.yml

@@ -241,7 +241,7 @@ jobs:
           command: |
             mkdir -p /tmp/fslicense
             cd /tmp/fslicense
-            echo "cHJpbnRmICJrcnp5c3p0b2YuZ29yZ29sZXdza2lAZ21haWwuY29tXG41MTcyXG4gKkN2dW12RVYzelRmZ1xuRlM1Si8yYzFhZ2c0RVxuIiA+IGxpY2Vuc2UudHh0Cg==" | base64 -d | sh
+              echo "cHJpbnRmICJrcnp5c3p0b2YuZ29yZ29sZXdza2lAZ21haWwuY29tXG41MTcyXG4gKkN2dW12RVYzelRmZ1xuRlM1Si8yYzFhZ2c0RVxuIiA+IGxpY2Vuc2UudHh0Cg==" | base64 -d | sh
       - persist_to_workspace:
           root: /tmp
           paths:
@@ -540,6 +540,24 @@ jobs:
       - store_artifacts:
           path: /tmp/ds005/derivatives
           destination: fasttrack
+      - run:
+          name: Check fs-reuse-base using existing freesufer output
+          no_output_timeout: 5m
+          command: |
+            bash /tmp/src/smriprep/.circleci/ds005_run.sh --fs-reuse-base
+      - run:
+          name: Clean working directory
+          when: on_fail
+          command: |
+            rm -rf /tmp/ds005/work/smriprep_wf/fsdir_run_*/
+            find /tmp/ds005/work \( -name "*.nii.gz" -or -name "*.nii" -or -name "*.gii" -or -name "*.h5" \) \
+                -exec sh -c 'rm -f {}; touch {}' \;
+      - store_artifacts:
+          path: /tmp/ds005/work
+          destination: fs_reuse_base
+      - store_artifacts:
+          path: /tmp/ds005/derivatives
+          destination: fs_reuse_base
   ds054:
     <<: *machine_defaults
     environment: