diff --git a/dmriprep/run.py b/dmriprep/run.py index 8829775..d1dec6d 100644 --- a/dmriprep/run.py +++ b/dmriprep/run.py @@ -755,13 +755,13 @@ def binarize_aparc(aparc_aseg): wf.connect(scale_tensor_eddy, "out_file", datasink, "dmriprep.dti_eddy.@scaled_tensor") # all the eddy_quad stuff - wf.connect(eddy_quad, 'qc_json', datasink, "dmriprep.qc.@eddyquad_json") - wf.connect(eddy_quad, 'qc_pdf', datasink, "dmriprep.qc.@eddyquad_pdf") - wf.connect(eddy_quad, 'avg_b_png', datasink, "dmriprep.qc.@eddyquad_bpng") - wf.connect(eddy_quad, 'avg_b0_pe_png', datasink, "dmriprep.qc.@eddyquad_b0png") - wf.connect(eddy_quad, 'cnr_png', datasink, "dmriprep.qc.@eddyquad_cnr") - wf.connect(eddy_quad, 'vdm_png', datasink, "dmriprep.qc.@eddyquad_vdm") - wf.connect(eddy_quad, 'residuals', datasink, 'dmriprep.qc.@eddyquad_resid') + wf.connect(eddy_quad, 'out_qc_json', datasink, "dmriprep.qc.@eddyquad_json") + wf.connect(eddy_quad, 'out_qc_pdf', datasink, "dmriprep.qc.@eddyquad_pdf") + wf.connect(eddy_quad, 'out_avg_b_png', datasink, "dmriprep.qc.@eddyquad_bpng") + wf.connect(eddy_quad, 'out_avg_b0_pe_png', datasink, "dmriprep.qc.@eddyquad_b0png") + wf.connect(eddy_quad, 'out_cnr_png', datasink, "dmriprep.qc.@eddyquad_cnr") + wf.connect(eddy_quad, 'out_vdm_png', datasink, "dmriprep.qc.@eddyquad_vdm") + wf.connect(eddy_quad, 'out_residuals', datasink, 'dmriprep.qc.@eddyquad_resid') # anatomical registration stuff wf.connect(bbreg, "min_cost_file", datasink, "dmriprep.reg.@mincost") @@ -793,7 +793,7 @@ def report_fn(dwi_corrected_file, eddy_rms, eddy_report, # for the report, lets show the eddy corrected (full volume) image wf.connect(voltransform, "transformed_file", report_node, 'dwi_corrected_file') - wf.connect(eddy_quad, 'qc_json', report_node, 'eddy_qc_file') + wf.connect(eddy_quad, 'out_qc_json', report_node, 'eddy_qc_file') # add the rms movement output from eddy wf.connect(prep, "fsl_eddy.out_movement_rms", report_node, 'eddy_rms')