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Replace one rogue markdown [ref](url) to ref <url>_ RST
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docs/reproin.rst

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Reproin
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Reproin
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This tutorial is based on `Dianne Patterson's University of Arizona tutorials <https://neuroimaging-core-docs.readthedocs.io/en/latest/pages/heudiconv.html#lesson-3-reproin-py>`_
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If you can control how your image sequences are named at the scanner, you can use the *reproin* naming convention.
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If you cannot control such naming, or already have collected data, you can provide your custom heuristic mapping into *reproin* and thus in effect use reproin heuristic.
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That will be a topic for another tutorial but meanwhile you can checkout `reproin/issues/18 <https://github.com/ReproNim/reproin/issues/18#issuecomment-834598084>`_ for a brief HOWTO.
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That will be a topic for another tutorial but meanwhile you can checkout `reproin/issues/18 <https://github.com/ReproNim/reproin/issues/18#issuecomment-834598084>`_ for a brief HOWTO.
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Get Example Dataset
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-------------------
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This example uses a phantom dataset: `reproin_dicom.zip <https://datasets.datalad.org/?dir=/repronim/heudiconv-reproin-example>`_ generated by the University of Arizona on their Siemens Skyra 3T with Syngo MR VE11c software on 2018_02_08.
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The ``REPROIN`` directory is a simple reproin-compliant DICOM (.dcm) dataset without sessions.
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The ``REPROIN`` directory is a simple reproin-compliant DICOM (.dcm) dataset without sessions.
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(Derived dwi images (ADC, FA etc.) that the scanner produced have been removed.::
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[user@local ~/reproin_dicom/REPROIN]$ tree -I "*.dcm"
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Reproin Scanner File Names
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****************************
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* For both BIDS and *reproin*, names are composed of an ordered series of key-value pairs, called [*entities*](https://github.com/bids-standard/bids-specification/blob/master/src/schema/objects/entities.yaml).
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* For both BIDS and *reproin*, names are composed of an ordered series of key-value pairs, called `*entities* <https://github.com/bids-standard/bids-specification/blob/master/src/schema/objects/entities.yaml>`_.
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Each key and its value are joined with a dash ``-`` (e.g., ``acq-MPRAGE``, ``dir-AP``).
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These key-value pairs are joined to other key-value pairs with underscores ``_``.
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The exception is the modality label, which is discussed more below.

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