Merge pull request #782 from yarikoptic/bf-pydicom

Fixup testing: kludge for pydicom 3.0.0 in dcmstack, ignore some warnings from nipype for python 3.12

Author: yarikoptic

heudiconv/dicoms.py

@@ -46,6 +46,11 @@
     # suppress warning
     import nibabel.nicom.dicomwrappers as dw
 
+# TODO: remove the kludge whenever
+# https://github.com/moloney/dcmstack/pull/90 is merged and released
+if not hasattr(dcm, "read_file"):
+    dcm.read_file = dcm.dcmread
+
 lgr = logging.getLogger(__name__)
 total_files = 0
 # Might be monkey patched by user heuristic to tune desired compression level.

tox.ini

@@ -42,6 +42,8 @@ filterwarnings =
     ignore:.*pkg_resources:DeprecationWarning
     # <https://github.com/nipy/nipype/issues/3563>
     ignore:.*Use setlocale.* instead:DeprecationWarning:nipype
+    # <https://github.com/nipy/nipype/pull/3670>
+    ignore:.*datetime.datetime.utcnow\(\) is deprecated.*:DeprecationWarning:nipype
 
 [coverage:run]
 include = heudiconv/*