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lines changed Original file line number Diff line number Diff line change @@ -33,11 +33,17 @@ as long as the following dependencies are in your path you can use the script
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- nibabel
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- dcm2niix
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- ## Tutorial with example conversion using Docker
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+ ## Tutorial with example conversion to BIDS format using Docker
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Please read this tutorial to understand how heudiconv works in practice.
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[ Slides here] ( http://nipy.org/workshops/2017-03-boston/lectures/bids-heudiconv/#1 )
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+ To generate lean BIDS output, consider using both the ` -b ` and the ` --minmeta ` flags
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+ to your heudiconv command. The ` -b ` flag generates a json file with BIDS keys, while
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+ the ` --minmeta ` flag restricts the json file to only BIDS keys. Without ` --minmeta ` ,
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+ the json file and the associated Nifti file contains DICOM metadata extracted using
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+ dicomstack.
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+
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## How it works (in some more detail)
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Call ` heudiconv ` like this:
You can’t perform that action at this time.
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