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28 | 28 | Sequence names on the scanner must follow this specification to avoid manual
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29 | 29 | conversion/handling:
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30 | 30 |
|
31 |
| - [PREFIX:][WIP ]<seqtype[-label]>[_ses-<SESID>][_task-<TASKID>][_acq-<ACQLABEL>][_run-<RUNID>][_dir-<DIR>][<more BIDS>][__<custom>] |
| 31 | + [PREFIX:][WIP ]<datatype[-<suffix>]>[_ses-<SESID>][_task-<TASKID>][_acq-<ACQLABEL>][_run-<RUNID>][_dir-<DIR>][<more BIDS>][__<custom>] |
32 | 32 |
|
33 | 33 | where
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34 | 34 | [PREFIX:] - leading capital letters followed by : are stripped/ignored
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|
42 | 42 | descriptive ones for e.g. SESID (_ses-movie, _ses-localizer)
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43 | 43 |
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44 | 44 |
|
45 |
| -<seqtype[-label]> |
46 |
| - a known BIDS sequence type which is usually a name of the folder under |
47 |
| - subject's directory. And (optional) label is specific per sequence type |
48 |
| - (e.g. typical "bold" for func, or "T1w" for "anat"), which could often |
49 |
| - (but not always) be deduced from DICOM. Known to BIDS modalities are: |
| 45 | +<datatype[-suffix]> |
| 46 | + a known BIDS sequence datatype which is usually a name of the folder under |
| 47 | + subject's directory. And (optional) suffix is a specific sequence type |
| 48 | + (e.g., "bold" for func, or "T1w" for "anat"), which could often |
| 49 | + (but not always) be deduced from DICOM. Known to ReproIn BIDS modalities |
| 50 | + are: |
50 | 51 |
|
51 | 52 | anat - anatomical data. Might also be collected multiple times across
|
52 | 53 | runs (e.g. if subject is taken out of magnet etc), so could
|
53 | 54 | (optionally) have "_run" definition attached. For "standard anat"
|
54 |
| - labels, please consult to "8.3 Anatomy imaging data" but most |
55 |
| - common are 'T1w', 'T2w', 'angio' |
| 55 | + suffixes, please consult to "8.3 Anatomy imaging data" but most |
| 56 | + common are 'T1w', 'T2w', 'angio'. |
| 57 | + beh - behavioral data. known but not "treated". |
56 | 58 | func - functional (AKA task, including resting state) data.
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57 | 59 | Typically contains multiple runs, and might have multiple different
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58 | 60 | tasks different per each run
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59 | 61 | (e.g. _task-memory_run-01, _task-oddball_run-02)
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60 | 62 | fmap - field maps
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61 | 63 | dwi - diffusion weighted imaging (also can as well have runs)
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62 | 64 |
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| 65 | + The other BIDS modalities are not known ATM and their data will not be |
| 66 | + converted and will be just skipped (with a warning). Full list of datatypes |
| 67 | + can be found at |
| 68 | + https://github.com/bids-standard/bids-specification/blob/v1.7.0/src/schema/objects/datatypes.yaml |
| 69 | + and their corresponding suffixes at |
| 70 | + https://github.com/bids-standard/bids-specification/tree/v1.7.0/src/schema/rules/datatypes |
| 71 | +
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63 | 72 | _ses-<SESID> (optional)
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64 | 73 | a session. Having a single sequence within a study would make that study
|
65 | 74 | follow "multi-session" layout. A common practice to have a _ses specifier
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