Merge pull request #124 from mgxd/enh/docker

enh: add git-annex-standalone to docker build, fully? support datalad

Author: mgxd

Dockerfile

@@ -1,11 +1,11 @@
-# Generated by Neurodocker v0.3.2-1-gcfd3c6f.
+# Generated by Neurodocker v0.3.2.
 #
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
 # pull request on our GitHub repository:
 #     https://github.com/kaczmarj/neurodocker
 #
-# Timestamp: 2017-12-01 19:04:23
+# Timestamp: 2017-12-26 18:41:41
 
 FROM debian:stretch
 
@@ -83,6 +83,26 @@ RUN conda create -y -q --name neuro python=2 \
     && sync \
     && sed -i '$isource activate neuro' $ND_ENTRYPOINT
 
+#--------------------------------------------------
+# Add NeuroDebian repository
+# Please note that some packages downloaded through
+# NeuroDebian may have restrictive licenses.
+#--------------------------------------------------
+RUN apt-get update -qq && apt-get install -yq --no-install-recommends dirmngr gnupg \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* \
+    && curl -sSL http://neuro.debian.net/lists/stretch.us-nh.full \
+    > /etc/apt/sources.list.d/neurodebian.sources.list \
+    && curl -sSL https://dl.dropbox.com/s/zxs209o955q6vkg/neurodebian.gpg \
+    | apt-key add - \
+    && (apt-key adv --refresh-keys --keyserver hkp://pool.sks-keyservers.net:80 0xA5D32F012649A5A9 || true) \
+    && apt-get update
+
+# Install NeuroDebian packages
+RUN apt-get update -qq && apt-get install -yq --no-install-recommends git-annex-standalone \
+    && apt-get clean \
+    && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
 ENTRYPOINT ["/neurodocker/startup.sh", "heudiconv"]
 
 #--------------------------------------
@@ -127,10 +147,18 @@ RUN echo '{ \
     \n      } \
     \n    ], \
     \n    [ \
+    \n      "neurodebian", \
+    \n      { \
+    \n        "os_codename": "stretch", \
+    \n        "download_server": "usa-nh", \
+    \n        "pkgs": "git-annex-standalone" \
+    \n      } \
+    \n    ], \
+    \n    [ \
     \n      "entrypoint", \
     \n      "/neurodocker/startup.sh heudiconv" \
     \n    ] \
     \n  ], \
-    \n  "generation_timestamp": "2017-12-01 19:04:23", \
-    \n  "neurodocker_version": "0.3.2-1-gcfd3c6f" \
+    \n  "generation_timestamp": "2017-12-26 18:41:41", \
+    \n  "neurodocker_version": "0.3.2" \
     \n}' > /neurodocker/neurodocker_specs.json