rf: move to absolute import

Author: mgxd

heudiconv/__init__.py

@@ -1,7 +1,7 @@
 # set logger handler
 import logging
 import os
-from .info import (__version__, __packagename__)
+from heudiconv.info import (__version__, __packagename__)
 
 # Rudimentary logging support.
 lgr = logging.getLogger(__name__)

heudiconv/bids.py

@@ -13,8 +13,8 @@
 
 from heudiconv.external.pydicom import dcm
 
-from .parser import find_files
-from .utils import (
+from heudiconv.parser import find_files
+from heudiconv.utils import (
     load_json,
     save_json,
     create_file_if_missing,

heudiconv/cli/run.py

@@ -5,12 +5,12 @@
 from argparse import ArgumentParser
 import sys
 
-from .. import __version__, __packagename__
-from ..parser import get_study_sessions
-from ..utils import load_heuristic, anonymize_sid, treat_infofile, SeqInfo
-from ..convert import prep_conversion
-from ..bids import populate_bids_templates, tuneup_bids_json_files
-from ..queue import queue_conversion
+from heudiconv import __version__, __packagename__
+from heudiconv.parser import get_study_sessions
+from heudiconv.utils import load_heuristic, anonymize_sid, treat_infofile, SeqInfo
+from heudiconv.convert import prep_conversion
+from heudiconv.bids import populate_bids_templates, tuneup_bids_json_files
+from heudiconv.queue import queue_conversion
 
 import inspect
 import logging
@@ -84,11 +84,11 @@ def process_extra_commands(outdir, args):
     elif args.command == 'sanitize-jsons':
         tuneup_bids_json_files(args.files)
     elif args.command == 'heuristics':
-        from ..utils import get_known_heuristics_with_descriptions
+        from heudiconv.utils import get_known_heuristics_with_descriptions
         for name_desc in get_known_heuristics_with_descriptions().items():
             print("- %s: %s" % name_desc)
     elif args.command == 'heuristic-info':
-        from ..utils import get_heuristic_description, get_known_heuristic_names
+        from heudiconv.utils import get_heuristic_description, get_known_heuristic_names
         if not args.heuristic:
             raise ValueError("Specify heuristic using -f. Known are: %s"
                              % ', '.join(get_known_heuristic_names()))

heudiconv/convert.py

@@ -4,7 +4,7 @@
 import shutil
 import sys
 
-from .utils import (
+from heudiconv.utils import (
     read_config,
     load_json,
     save_json,
@@ -18,15 +18,15 @@
     assure_no_file_exists,
     file_md5sum
 )
-from .bids import (
+from heudiconv.bids import (
     convert_sid_bids,
     populate_bids_templates,
     save_scans_key,
     tuneup_bids_json_files,
     add_participant_record,
     BIDSError
 )
-from .dicoms import (
+from heudiconv.dicoms import (
     group_dicoms_into_seqinfos,
     embed_metadata_from_dicoms,
     compress_dicoms

heudiconv/dicoms.py

@@ -4,9 +4,9 @@
 import logging
 from collections import OrderedDict
 import tarfile
-from heudiconv.external.pydicom import dcm
 
-from .utils import SeqInfo, load_json, set_readonly
+from heudiconv.external.pydicom import dcm
+from heudiconv.utils import SeqInfo, load_json, set_readonly
 
 lgr = logging.getLogger(__name__)
 

heudiconv/external/dcmstack.py

@@ -2,7 +2,7 @@
 
 from __future__ import absolute_import
 
-from .pydicom import dcm  # to assure that we have it one way or another
+from heudiconv.external.pydicom import dcm  # to assure that we have it one way or another
 
 try:
     import dcmstack as ds

heudiconv/parser.py

@@ -9,8 +9,8 @@
 import tarfile
 from tempfile import mkdtemp
 
-from .dicoms import group_dicoms_into_seqinfos
-from .utils import (
+from heudiconv.dicoms import group_dicoms_into_seqinfos
+from heudiconv.utils import (
     docstring_parameter,
     StudySessionInfo,
 )