Merge pull request #64 from mgxd/enh/docker

DOCKER: update dcm2niix version

Author: satra

Dockerfile

@@ -1,9 +1,10 @@
+
 FROM continuumio/miniconda
 
 MAINTAINER <[email protected]>
 
 RUN apt-get update && apt-get upgrade -y && apt-get install -y g++ && apt-get clean -y && apt-get autoclean -y && apt-get autoremove -y
-RUN cd /tmp && git clone https://github.com/neurolabusc/dcm2niix.git && cd dcm2niix/console/ && git checkout e262240bb27e8f4c9440d6b1a97dfd98ef0f9939 && g++ -O3 -I. main_console.cpp nii_dicom.cpp jpg_0XC3.cpp ujpeg.cpp nifti1_io_core.cpp nii_ortho.cpp nii_dicom_batch.cpp  -o dcm2niix -DmyDisableOpenJPEG -DmyDisableJasper && cp dcm2niix /usr/local/bin/ 
+RUN cd /tmp && git clone https://github.com/neurolabusc/dcm2niix.git && cd dcm2niix/console/ && git checkout 60bab318ee738b644ebb1396bbb8cbe1b006218f && g++ -O3 -I. main_console.cpp nii_dicom.cpp jpg_0XC3.cpp ujpeg.cpp nifti1_io_core.cpp nii_ortho.cpp nii_dicom_batch.cpp nii_foreign.cpp -o dcm2niix -DmyDisableOpenJPEG -DmyDisableJasper && cp dcm2niix /usr/local/bin/
 RUN conda install -y -c conda-forge nipype && pip install https://github.com/moloney/dcmstack/archive/c12d27d2c802d75a33ad70110124500a83e851ee.zip && pip install https://github.com/nipy/nipype/archive/dd1ed4f0d5735c69c1743f29875acf09d23a62e0.zip
 RUN curl -O https://raw.githubusercontent.com/nipy/heudiconv/master/bin/heudiconv && chmod +x heudiconv && cp heudiconv /usr/local/bin/
 RUN curl -O https://raw.githubusercontent.com/nipy/heudiconv/master/heuristics/convertall.py && chmod +x convertall.py