install heudiconv as editable

Author: Jakub Kaczmarzyk

Dockerfile

@@ -1,5 +1,5 @@
 # Generated by Neurodocker version 0.4.1-28-g83dbc15
-# Timestamp: 2018-11-01 21:17:58 UTC
+# Timestamp: 2018-11-01 22:00:14 UTC
 # 
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
@@ -96,7 +96,7 @@ RUN export PATH="/opt/miniconda-latest/bin:$PATH" \
            nomkl \
     && sync && conda clean -tipsy && sync \
     && bash -c "source activate base \
-    &&   pip install --no-cache-dir  \
+    &&   pip install --no-cache-dir --editable \
              /src/heudiconv[all]" \
     && rm -rf ~/.cache/pip/* \
     && sync
@@ -148,7 +148,8 @@ RUN echo '{ \
     \n        ], \
     \n        "pip_install": [ \
     \n          "/src/heudiconv[all]" \
-    \n        ] \
+    \n        ], \
+    \n        "pip_opts": "--editable" \
     \n      } \
     \n    ], \
     \n    [ \

utils/gen-docker-image.sh

@@ -12,5 +12,6 @@ docker run --rm $image generate docker -b neurodebian:stretch -p apt \
     --copy . /src/heudiconv \
     --miniconda use_env=base conda_install="python=3.6 traits>=4.6.0 scipy numpy nomkl" \
       pip_install="/src/heudiconv[all]" \
+      pip_opts="--editable" \
     --entrypoint "heudiconv" \
 > ../Dockerfile