fix: neurodocker bf

Author: mgxd

Dockerfile

@@ -1,11 +1,11 @@
-# Generated by Neurodocker v0.3.2.
+# Generated by Neurodocker v0.3.2-1-gcfd3c6f.
 #
 # Thank you for using Neurodocker. If you discover any issues
 # or ways to improve this software, please submit an issue or
 # pull request on our GitHub repository:
 #     https://github.com/kaczmarj/neurodocker
 #
-# Timestamp: 2017-11-29 21:24:26
+# Timestamp: 2017-12-01 15:38:42
 
 FROM debian:stretch
 
@@ -33,8 +33,8 @@ RUN apt-get update -qq && apt-get install -yq --no-install-recommends  \
 ENTRYPOINT ["/neurodocker/startup.sh"]
 
 RUN apt-get update -qq \
-    && apt-get install -y -q --no-install-recommends gcc \
-                                                     git \
+    && apt-get install -y -q --no-install-recommends git \
+                                                     gcc \
                                                      pigz \
     && apt-get clean \
     && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
@@ -52,8 +52,7 @@ RUN deps='cmake g++ gcc git make pigz zlib1g-dev' \
     && mkdir dcm2niix/build && cd dcm2niix/build \
     && cmake .. && make \
     && make install \
-    && rm -rf /tmp/* \
-    && apt-get purge -y --auto-remove $deps
+    && rm -rf /tmp/*
 
 COPY [".", "/src/heudiconv"]
 
@@ -79,9 +78,8 @@ RUN conda create -y -q --name neuro python=2 \
                                     traits=4.6.0 \
     && sync && conda clean -tipsy && sync \
     && /bin/bash -c "source activate neuro \
-      && pip install -q --no-cache-dir datalad \
-                                       https://github.com/moloney/dcmstack/tarball/master \
-                                       /src/heudiconv" \
+      && pip install -q --no-cache-dir https://github.com/moloney/dcmstack/tarball/master \
+                                       /src/heudiconv[all]" \
     && sync \
     && sed -i '$isource activate neuro' $ND_ENTRYPOINT
 
@@ -101,8 +99,8 @@ RUN echo '{ \
     \n    [ \
     \n      "install", \
     \n      [ \
-    \n        "gcc", \
     \n        "git", \
+    \n        "gcc", \
     \n        "pigz" \
     \n      ] \
     \n    ], \
@@ -124,7 +122,7 @@ RUN echo '{ \
     \n      { \
     \n        "env_name": "neuro", \
     \n        "conda_install": "python=2 traits=4.6.0", \
-    \n        "pip_install": "datalad https://github.com/moloney/dcmstack/tarball/master /src/heudiconv", \
+    \n        "pip_install": "https://github.com/moloney/dcmstack/tarball/master /src/heudiconv[all]", \
     \n        "activate": true \
     \n      } \
     \n    ], \
@@ -135,6 +133,6 @@ RUN echo '{ \
     \n      ] \
     \n    ] \
     \n  ], \
-    \n  "generation_timestamp": "2017-11-29 21:24:26", \
-    \n  "neurodocker_version": "0.3.2" \
+    \n  "generation_timestamp": "2017-12-01 15:38:42", \
+    \n  "neurodocker_version": "0.3.2-1-gcfd3c6f" \
     \n}' > /neurodocker/neurodocker_specs.json