Merge pull request #487 from cbinyu/adds_acq_time_to_seqinfo

ENH: Adds "AcquisitionTime" to the `seqinfo`

Author: yarikoptic

heudiconv/dicoms.py

@@ -89,7 +89,8 @@ def create_seqinfo(mw, series_files, series_id):
         patient_age=dcminfo.get('PatientAge'),
         patient_sex=dcminfo.get('PatientSex'),
         date=dcminfo.get('AcquisitionDate'),
-        series_uid=dcminfo.get('SeriesInstanceUID')
+        series_uid=dcminfo.get('SeriesInstanceUID'),
+        time=dcminfo.get('AcquisitionTime'),
     )
     return seqinfo
 

heudiconv/tests/test_main.py

@@ -283,6 +283,11 @@ def test_cache(tmpdir):
     assert (cachedir / 'S01.auto.txt').exists()
     assert (cachedir / 'S01.edit.txt').exists()
 
+    # check dicominfo has "time" as last column:
+    with open(str(cachedir / 'dicominfo.tsv'), 'r') as f:
+        cols = f.readline().split()
+    assert cols[26] == "time"
+
 
 def test_no_etelemetry():
     # smoke test at large - just verifying that no crash if no etelemetry

heudiconv/utils.py

@@ -46,7 +46,8 @@
     'patient_sex',           # 23
     'date',                  # 24
     'series_uid',            # 25
- ]
+    'time',                  # 26
+]
 
 SeqInfo = namedtuple('SeqInfo', seqinfo_fields)