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Description
ERROR: Embedding failed: Exception raised while executing Node embedder.
Traceback:
Traceback (most recent call last):
File "/opt/miniconda-py39_4.12.0/lib/python3.9/site-packages/nipype/interfaces/base/core.py", line 401, in run
runtime = self._run_interface(runtime)
File "/opt/miniconda-py39_4.12.0/lib/python3.9/site-packages/nipype/interfaces/utility/wrappers.py", line 139, in _run_interface
out = function_handle(**args)
File "", line 35, in embed_dicom_and_nifti_metadata
File "/opt/miniconda-py39_4.12.0/lib/python3.9/site-packages/dcmstack/dcmstack.py", line 1163, in parse_and_stack
results[key] = stack_group(group, warn_on_except, **stack_args)
File "/opt/miniconda-py39_4.12.0/lib/python3.9/site-packages/dcmstack/dcmstack.py", line 1117, in stack_group
result.add_dcm(dcm, meta)
File "/opt/miniconda-py39_4.12.0/lib/python3.9/site-packages/dcmstack/dcmstack.py", line 520, in add_dcm
self._chk_congruent(meta)
File "/opt/miniconda-py39_4.12.0/lib/python3.9/site-packages/dcmstack/dcmstack.py", line 479, in _chk_congruent
self._chk_close(('PixelSpacing',
File "/opt/miniconda-py39_4.12.0/lib/python3.9/site-packages/dcmstack/dcmstack.py", line 473, in _chk_close
if not np.allclose(meta1[key], meta2[key], atol=5e-5):
KeyError: 'PixelSpacing'
The pixel spacing tag is present but it is nested format,
(5200,9230) Per-frame Functional Groups Sequence tag
(0028,9110) Pixel Measures Sequence.
(0028,0030) Pixel Spacing value.
can you guys let me know, how I can resolve the issue? Thank You.