solved package dependency

Author: Shuo Han

colors_script/calc_colormap.py

@@ -2,9 +2,7 @@
 # -*- coding: utf-8 -*-
 
 
-import sys
-sys.path.append('../mindboggle/mio')
-import colors
+from mindboggle.mio import colors
 import numpy as np
 import os
 import argparse

mindboggle/mio/colors.py

@@ -8,10 +8,8 @@
 Copyright 2016,  Mindboggle team (http://mindboggle.info), Apache v2.0 License
 
 """
-import sys
-sys.path.append('../../mindboggle')
-import os
 
+import os
 
 def distinguishable_colors(ncolors, backgrounds=[[0,0,0],[1,1,1]],
                            save_csv=True, plot_colormap=True, verbose=True,

setup.py

@@ -69,12 +69,12 @@ def main(**extra_args):
           package_data={'mindboggle': [pjoin('data', '*.nii.gz'),
                                        pjoin('data', '*.txt')]},
           scripts=[pjoin('mindboggle', 'mindboggle'),
-                   pjoin('mindboggle', 'mindboggle123')],
+                   pjoin('mindboggle', 'mindboggle123'),
+                   pjoin('colors_script', 'calc_colormap.py'),
+                   pjoin('colors_script', 'convert_to_mipav_lut.py')],
           **extra_args
          )
 
 if __name__ == "__main__":
     main()
     #main(**extra_setuptools_args)
-
-