DOC http->https where both work and have same content

Author: effigies

doc/source/_templates/indexsidebar.html

@@ -1,8 +1,8 @@
 <h3>Quick links</h3>
 
 <ul>
-    <li><a href="http://pypi.python.org/pypi/nibabel">Nibabel pypi</a></li>
-    <li><a href="http://github.com/nipy/nibabel">Git repository</a></li>
+    <li><a href="https://pypi.python.org/pypi/nibabel">Nibabel pypi</a></li>
+    <li><a href="https://github.com/nipy/nibabel">Git repository</a></li>
     <li><a href="http://mail.scipy.org/pipermail/nipy-devel">Mailing list archive</a></li>
 </ul>
 

doc/source/conf.py

@@ -252,7 +252,7 @@
 
 
 # Example configuration for intersphinx: refer to the Python standard library.
-intersphinx_mapping = {'http://docs.python.org/': None}
+intersphinx_mapping = {'https://docs.python.org/': None}
 
 # Config of plot_directive
 plot_include_source = True

doc/source/devel/data_pkg_design.rst

@@ -288,7 +288,7 @@ There is an example nipy data package ``nipy-examplepkg`` in the
 ``examples`` directory of the NIPY repository.
 
 The machinery for creating and maintaining data packages is available at
-http://github.com/nipy/data-packaging.
+https://github.com/nipy/data-packaging.
 
 See the ``README.txt`` file there for more information.
 

doc/source/devel/data_pkg_discuss.rst

@@ -275,7 +275,7 @@ Issues
 ******
 
 From a brief scan of the `debian package management documentation
-<http://www.debian.org/doc/manuals/debian-reference/ch02.en.html>`_.
+<https://www.debian.org/doc/manuals/debian-reference/ch02.en.html>`_.
 
 Dependency management
 =====================
@@ -292,7 +292,7 @@ Authentication and validation
 For dependency and validation, see the `Debian secure apt`_ page. One related
 proposal would be:
 
-.. _Debian secure apt: http://wiki.debian.org/SecureApt
+.. _Debian secure apt: https://wiki.debian.org/SecureApt
 
 * Each package instantiation would carry a table of checksums for the files
   within.  Someone using this instantiation would check the checksums to confirm

doc/source/devel/make_release.rst

@@ -180,14 +180,14 @@ Release checklist
 
 * Force builds of the win32 and amd64 binaries from the buildbot. Go to pages:
 
-  * http://nipy.bic.berkeley.edu/builders/nibabel-bdist32-27
-  * http://nipy.bic.berkeley.edu/builders/nibabel-bdist32-34
-  * http://nipy.bic.berkeley.edu/builders/nibabel-bdist64-27
+  * https://nipy.bic.berkeley.edu/builders/nibabel-bdist32-27
+  * https://nipy.bic.berkeley.edu/builders/nibabel-bdist32-34
+  * https://nipy.bic.berkeley.edu/builders/nibabel-bdist64-27
 
   For each of these, enter the revision number (e.g. "2.0.0") in the field
   "Revision to build". Then get the built binaries in:
 
-  * http://nipy.bic.berkeley.edu/nibabel-dist
+  * https://nipy.bic.berkeley.edu/nibabel-dist
 
   and upload them to pypi with the admin files interface.
 

doc/source/dicom/dcm2nii_algorithms.rst

@@ -9,7 +9,7 @@ by Chris Rorden, in Delphi (object orientated pascal).  It's part of
 Chris' popular mricron_ collection of programs.  The source appears to
 be best found on the `mricron NITRC site`_.  It's BSD_ licensed. 
 
-.. _mricron NITRC site: http://www.nitrc.org/projects/mricron
+.. _mricron NITRC site: https://www.nitrc.org/projects/mricron
 
 These are working notes looking at Chris' algorithms for working with
 DICOM.

doc/source/dicom/dicom_info.rst

@@ -37,7 +37,7 @@ Here is a selected list of other tools and relevant resources:
   headers, and has been tested with Philips, GE and Siemens data. It's
   not clear whether it yet supports the :ref:`dicom-mosaic`.  BSD_ style
   license.
-* The famous Philips cookbook: http://www.archive.org/details/DicomCookbook
+* The famous Philips cookbook: https://www.archive.org/details/DicomCookbook
 * http://dicom.online.fr/fr/dicomlinks.htm
 
 ===============

doc/source/gitwash/development_workflow.rst

@@ -150,7 +150,7 @@ Ask for your changes to be reviewed or merged
 When you are ready to ask for someone to review your code and consider a merge:
 
 #. Go to the URL of your forked repo, say
-   ``http://github.com/your-user-name/nibabel``.
+   ``https://github.com/your-user-name/nibabel``.
 #. Use the 'Switch Branches' dropdown menu near the top left of the page to
    select the branch with your changes:
 
@@ -183,7 +183,7 @@ Delete a branch on github
    git push origin :my-unwanted-branch
 
 (Note the colon ``:`` before ``test-branch``.  See also:
-http://github.com/guides/remove-a-remote-branch
+https://github.com/guides/remove-a-remote-branch
 
 Several people sharing a single repository
 ------------------------------------------
@@ -195,7 +195,7 @@ share it via github.
 First fork nibabel into your account, as from :ref:`forking`.
 
 Then, go to your forked repository github page, say
-``http://github.com/your-user-name/nibabel``
+``https://github.com/your-user-name/nibabel``
 
 Click on the 'Admin' button, and add anyone else to the repo as a
 collaborator:

doc/source/gitwash/git_links.inc

@@ -9,52 +9,52 @@
    nipy, NIPY, Nipy, etc...
 
 .. git stuff
-.. _git: http://git-scm.com/
-.. _github: http://github.com
-.. _github help: http://help.github.com
+.. _git: https://git-scm.com/
+.. _github: https://github.com
+.. _github help: https://help.github.com
 .. _msysgit: http://code.google.com/p/msysgit/downloads/list
-.. _git-osx-installer: http://code.google.com/p/git-osx-installer/downloads/list
+.. _git-osx-installer: https://code.google.com/p/git-osx-installer/downloads/list
 .. _subversion: http://subversion.tigris.org/
-.. _git cheat sheet: http://github.com/guides/git-cheat-sheet
-.. _pro git book: http://progit.org/
-.. _git svn crash course: http://git-scm.com/course/svn.html
+.. _git cheat sheet: https://github.com/guides/git-cheat-sheet
+.. _pro git book: https://progit.org/
+.. _git svn crash course: https://git-scm.com/course/svn.html
 .. _learn.github: http://learn.github.com/
-.. _network graph visualizer: http://github.com/blog/39-say-hello-to-the-network-graph-visualizer
-.. _git user manual: http://www.kernel.org/pub/software/scm/git/docs/user-manual.html
-.. _git tutorial: http://www.kernel.org/pub/software/scm/git/docs/gittutorial.html
+.. _network graph visualizer: https://github.com/blog/39-say-hello-to-the-network-graph-visualizer
+.. _git user manual: https://www.kernel.org/pub/software/scm/git/docs/user-manual.html
+.. _git tutorial: https://www.kernel.org/pub/software/scm/git/docs/gittutorial.html
 .. _git community book: http://book.git-scm.com/
 .. _git ready: http://www.gitready.com/
 .. _git casts: http://www.gitcasts.com/
 .. _Fernando's git page: http://www.fperez.org/py4science/git.html
 .. _git magic: http://www-cs-students.stanford.edu/~blynn/gitmagic/index.html
 .. _git concepts: http://www.eecs.harvard.edu/~cduan/technical/git/
-.. _git clone: http://www.kernel.org/pub/software/scm/git/docs/git-clone.html
-.. _git checkout: http://www.kernel.org/pub/software/scm/git/docs/git-checkout.html
-.. _git commit: http://www.kernel.org/pub/software/scm/git/docs/git-commit.html
-.. _git push: http://www.kernel.org/pub/software/scm/git/docs/git-push.html
-.. _git pull: http://www.kernel.org/pub/software/scm/git/docs/git-pull.html
-.. _git add: http://www.kernel.org/pub/software/scm/git/docs/git-add.html
-.. _git status: http://www.kernel.org/pub/software/scm/git/docs/git-status.html
-.. _git diff: http://www.kernel.org/pub/software/scm/git/docs/git-diff.html
-.. _git log: http://www.kernel.org/pub/software/scm/git/docs/git-log.html
-.. _git branch: http://www.kernel.org/pub/software/scm/git/docs/git-branch.html
-.. _git remote: http://www.kernel.org/pub/software/scm/git/docs/git-remote.html
-.. _git rebase: http://www.kernel.org/pub/software/scm/git/docs/git-rebase.html
-.. _git config: http://www.kernel.org/pub/software/scm/git/docs/git-config.html
+.. _git clone: https://www.kernel.org/pub/software/scm/git/docs/git-clone.html
+.. _git checkout: https://www.kernel.org/pub/software/scm/git/docs/git-checkout.html
+.. _git commit: https://www.kernel.org/pub/software/scm/git/docs/git-commit.html
+.. _git push: https://www.kernel.org/pub/software/scm/git/docs/git-push.html
+.. _git pull: https://www.kernel.org/pub/software/scm/git/docs/git-pull.html
+.. _git add: https://www.kernel.org/pub/software/scm/git/docs/git-add.html
+.. _git status: https://www.kernel.org/pub/software/scm/git/docs/git-status.html
+.. _git diff: https://www.kernel.org/pub/software/scm/git/docs/git-diff.html
+.. _git log: https://www.kernel.org/pub/software/scm/git/docs/git-log.html
+.. _git branch: https://www.kernel.org/pub/software/scm/git/docs/git-branch.html
+.. _git remote: https://www.kernel.org/pub/software/scm/git/docs/git-remote.html
+.. _git rebase: https://www.kernel.org/pub/software/scm/git/docs/git-rebase.html
+.. _git config: https://www.kernel.org/pub/software/scm/git/docs/git-config.html
 .. _why the -a flag?: http://www.gitready.com/beginner/2009/01/18/the-staging-area.html
 .. _git staging area: http://www.gitready.com/beginner/2009/01/18/the-staging-area.html
 .. _tangled working copy problem: http://tomayko.com/writings/the-thing-about-git 
 .. _git management: http://kerneltrap.org/Linux/Git_Management
-.. _linux git workflow: http://www.mail-archive.com/[email protected]/msg39091.html
+.. _linux git workflow: https://www.mail-archive.com/[email protected]/msg39091.html
 .. _git parable: http://tom.preston-werner.com/2009/05/19/the-git-parable.html
 .. _git foundation: http://matthew-brett.github.com/pydagogue/foundation.html
 .. _deleting master on github: http://matthew-brett.github.com/pydagogue/gh_delete_master.html
 .. _rebase without tears: http://matthew-brett.github.com/pydagogue/rebase_without_tears.html
-.. _resolving a merge: http://www.kernel.org/pub/software/scm/git/docs/user-manual.html#resolving-a-merge
+.. _resolving a merge: https://www.kernel.org/pub/software/scm/git/docs/user-manual.html#resolving-a-merge
 .. _ipython git workflow: http://mail.scipy.org/pipermail/ipython-dev/2010-October/006746.html
 
 .. other stuff
-.. _python: http://www.python.org
+.. _python: https://www.python.org
 
 .. |emdash| unicode:: U+02014
 

doc/source/gitwash/known_projects.inc

@@ -2,40 +2,40 @@
 
 .. PROJECTNAME placeholders
 .. _PROJECTNAME: http://neuroimaging.scipy.org
-.. _`PROJECTNAME github`: http://github.com/nipy
+.. _`PROJECTNAME github`: https://github.com/nipy
 .. _`PROJECTNAME mailing list`: http://projects.scipy.org/mailman/listinfo/nipy-devel
 
 .. numpy
 .. _numpy: hhttp://numpy.scipy.org
-.. _`numpy github`: http://github.com/numpy/numpy
+.. _`numpy github`: https://github.com/numpy/numpy
 .. _`numpy mailing list`: http://mail.scipy.org/mailman/listinfo/numpy-discussion
 
 .. scipy
 .. _scipy: http://www.scipy.org
-.. _`scipy github`: http://github.com/scipy/scipy
+.. _`scipy github`: https://github.com/scipy/scipy
 .. _`scipy mailing list`: http://mail.scipy.org/mailman/listinfo/scipy-dev
 
 .. nipy
 .. _nipy: http://nipy.org/nipy
-.. _`nipy github`: http://github.com/nipy/nipy
+.. _`nipy github`: https://github.com/nipy/nipy
 .. _`nipy mailing list`: http://mail.scipy.org/mailman/listinfo/nipy-devel
 
 .. ipython
 .. _ipython: http://ipython.scipy.org
-.. _`ipython github`: http://github.com/ipython/ipython
+.. _`ipython github`: https://github.com/ipython/ipython
 .. _`ipython mailing list`: http://mail.scipy.org/mailman/listinfo/IPython-dev
 
 .. dipy
 .. _dipy: http://nipy.org/dipy
-.. _`dipy github`: http://github.com/Garyfallidis/dipy
+.. _`dipy github`: https://github.com/Garyfallidis/dipy
 .. _`dipy mailing list`: http://mail.scipy.org/mailman/listinfo/nipy-devel
 
 .. nibabel
 .. _nibabel: http://nipy.org/nibabel
-.. _`nibabel github`: http://github.com/nipy/nibabel
+.. _`nibabel github`: https://github.com/nipy/nibabel
 .. _`nibabel mailing list`: http://mail.scipy.org/mailman/listinfo/nipy-devel
 
 .. marsbar
 .. _marsbar: http://marsbar.sourceforge.net
-.. _`marsbar github`: http://github.com/matthew-brett/marsbar
+.. _`marsbar github`: https://github.com/matthew-brett/marsbar
 .. _`MarsBaR mailing list`: https://lists.sourceforge.net/lists/listinfo/marsbar-users