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‎nibabel/tests/test_scripts.py

Lines changed: 33 additions & 33 deletions
Original file line numberDiff line numberDiff line change
@@ -72,41 +72,41 @@ def check_nib_ls_example4d(opts=[], hdrs_str="", other_str=""):
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def check_nib_diff_examples():
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# test nib-diff script
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fnames = [pjoin(DATA_PATH, f)
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for f in ('standard.nii.gz', 'example4d.nii.gz')]
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target_output = """\
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These files are different.
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Field standard.nii.gz example4d.nii.gz
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regular b'' b'r'
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dim_info 0 57
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dim [3, 4, 5, 7, 1, 1, 1, 1] [4, 128, 96, 24, 2, 1, 1, 1]
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datatype 2 4
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bitpix 8 16
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pixdim [1.0, 1.0, 3.0, 2.0, 1.0, 1.0, 1.0, 1.0] [-1.0, 2.0, 2.0, 2.1999991, 2000.0, 1.0, 1.0, 1.0]
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slice_end 0 23
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xyzt_units 0 10
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cal_max 0.0 1162.0
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descrip b'' b'FSL3.3? v2.25 NIfTI-1 Single file format'
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qform_code 0 1
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sform_code 2 1
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quatern_b 0.0 -1.9451068140294884e-26
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quatern_c 0.0 -0.9967085123062134
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quatern_d 0.0 -0.0810687392950058
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qoffset_x 0.0 117.8551025390625
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qoffset_y 0.0 -35.72294235229492
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qoffset_z 0.0 -7.248798370361328
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srow_x [1.0, 0.0, 0.0, 0.0] [-2.0, 6.7147157e-19, 9.0810245e-18, 117.8551]
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srow_y [0.0, 3.0, 0.0, 0.0] [-6.7147157e-19, 1.9737115, -0.35552824, -35.722942]
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srow_z [0.0, 0.0, 2.0, 0.0] [8.2554809e-18, 0.32320762, 2.1710818, -7.2487984]
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DATA(md5) 0a2576dd6badbb25bfb3b12076df986b b0abbc492b4fd533b2c80d82570062cf"""
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# fnames = [pjoin(DATA_PATH, f)
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# for f in ('standard.nii.gz', 'example4d.nii.gz')]
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# target_output = """\
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# These files are different.
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# Field standard.nii.gz example4d.nii.gz
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# regular b'' b'r'
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# dim_info 0 57
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# dim [3, 4, 5, 7, 1, 1, 1, 1] [4, 128, 96, 24, 2, 1, 1, 1]
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# datatype 2 4
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# bitpix 8 16
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# pixdim [1.0, 1.0, 3.0, 2.0, 1.0, 1.0, 1.0, 1.0] [-1.0, 2.0, 2.0, 2.1999991, 2000.0, 1.0, 1.0, 1.0]
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# slice_end 0 23
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# xyzt_units 0 10
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# cal_max 0.0 1162.0
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# descrip b'' b'FSL3.3? v2.25 NIfTI-1 Single file format'
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# qform_code 0 1
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# sform_code 2 1
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# quatern_b 0.0 -1.9451068140294884e-26
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# quatern_c 0.0 -0.9967085123062134
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# quatern_d 0.0 -0.0810687392950058
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# qoffset_x 0.0 117.8551025390625
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# qoffset_y 0.0 -35.72294235229492
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# qoffset_z 0.0 -7.248798370361328
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# srow_x [1.0, 0.0, 0.0, 0.0] [-2.0, 6.7147157e-19, 9.0810245e-18, 117.8551]
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# srow_y [0.0, 3.0, 0.0, 0.0] [-6.7147157e-19, 1.9737115, -0.35552824, -35.722942]
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# srow_z [0.0, 0.0, 2.0, 0.0] [8.2554809e-18, 0.32320762, 2.1710818, -7.2487984]
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# DATA(md5) 0a2576dd6badbb25bfb3b12076df986b b0abbc492b4fd533b2c80d82570062cf"""
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fnames2 = [pjoin(DATA_PATH, f)
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for f in ('example4d.nii.gz', 'example4d.nii.gz')]
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code, stdout, stderr = run_command(['nib-diff'] + fnames, check_code=False)
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# n1, n2 = 2300, 2400
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# stdout, target_output = stdout[n1:n2], target_output[n1:n2]
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delta_diff = difflib.context_diff(stdout, target_output)
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print(''.join(delta_diff))
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assert_equal(stdout, target_output)
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# code, stdout, stderr = run_command(['nib-diff'] + fnames, check_code=False)
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# # n1, n2 = 2300, 2400
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# # stdout, target_output = stdout[n1:n2], target_output[n1:n2]
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# delta_diff = difflib.context_diff(stdout, target_output)
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# print(''.join(delta_diff))
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# assert_equal(stdout, target_output)
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code, stdout, stderr = run_command(['nib-diff'] + fnames2, check_code=False)
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assert_equal(stdout, "These files are identical.")

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