Instructions

• Install NiLabels: the current version is not (yet) pip installable. It can be installed in development mode. To proceed, initialise a virtual environment and execute the following instructions:

cd <folder where to clone the code>
git clone https://github.com/SebastianoF/nilabels.git
cd nilabels
pip install -e .

In development mode every change made to your local code will be directly affecting the installed library without reinstalling.

• Install python requirements in requirements.txt with pip install -r requirements.txt in a virtualenv.

• For advanced method symmetrise_wit_registration, extra examples and quick arrays visualisation with ITK-snap you can

  • Install NiftyReg
  • Install ITK-snap

To uninstall:

pip uninstall nilabels

To delete the library in the virtualenv in case something really wrong happen and pip uninstall will not work correctly:

sudo rm -rf /path_to_site_packages_in_virtualenv/site-packages/nilabels*