initial materials for the flier

Author: yarikoptic

LICENSE

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+.. -*- mode: rst; fill-column: 78; indent-tabs-mode: nil -*-
+.. vi: set ft=rst sts=4 ts=4 sw=4 et tw=79:
+
+Terms of Use
+============
+
+Materials in the repository are copyright of respective authors (see
+below) and unless otherwise stated distributed under `Creative Commons
+Attribution-Share Alike 3.0`_ license.
+
+.. _Creative Commons Attribution-Share Alike 3.0: http://creativecommons.org/licenses/by-sa/3.0/
+
+Authors
+=======
+
+- Yaroslav O. Halchenko
+- Michael Hanke
+

flier/Makefile

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+all: pics
+	rst2pdf materials.rst
+
+pics:
+	$(MAKE) -C ../pics

flier/materials.rst

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+.. -*- mode: rst; fill-column: 78; indent-tabs-mode: nil -*-
+.. vi: set ft=rst sts=4 ts=4 sw=4 et tw=79:
+
+Python in NeuroImaging
+======================
+
+
+Please provide for every sub-project a brief Description, list of
+Features, some nice figure if you have any.  Hopefully eventually we
+get enough of tasty materials someone could compose into a flier.
+
+Stimuli Delivery
+----------------
+
+PsychoPy
+~~~~~~~~
+http://www.psychopy.org
+
+
+OpenSesame
+~~~~~~~~~~
+http://www.cogsci.nl/software/opensesame
+
+...
+
+Input/Output
+------------
+
+NiBabel
+~~~~~~~
+http://nipy.org/nibabel
+
+Analysis
+--------
+
+NiPy
+~~~~
+http://nipy.org/nipy
+
+
+NiPype
+~~~~~~
+http://nipy.org/nipype
+
+
+DiPy
+~~~~
+http://nipy.org/dipy
+
+
+NiTime
+~~~~~~
+http://nipy.org/nitime
+
+
+PyMVPA
+~~~~~~
+http://www.pymvpa.org
+
+.. figure:: ../pics/pymvpa_logo.pdf
+   :alt: PyMVPA
+   :align: right
+   :figwidth: 35%
+
+PyMVPA eases statistical learning analyses (or otherwise called
+Multivariate pattern analysis, MVPA) of large datasets, with an accent
+on neuroimaging.
+
+Features:
+
+ - Easy I/O to Neuroimaging data (via NiBabel)
+ - Variety of machine learning methods (e.g. SVM, SMLR, kNN)
+ - Uniform interfaces to other toolkits (e.g. MDP, Shogun, Scikit-learn)
+ - Flexible Searchlight-ing
+ - Uber-Fast GNB Searchlight-ing
+ - Hyperalignment (Haxby et al 2011, Neuron)
+
+.. figure:: ../pics/pymvpa_shot.pdf
+   :alt: PyMVPA Analyses
+   :align: right
+   :figwidth: 100%
+
+
+Visualization
+-------------
+
+PySurfer
+~~~~~~~~
+http://pysurfer.github.com
+
+
+

pics/.gitignore

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+pymvpa_logo.pdf

pics/Makefile

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+all:: pics
+
+# Optionally some PICS could be ignored. By default XXX ones.
+# PICS_IGNORE must contain a rule for grep
+PICS_IGNORE ?= "XXX"
+
+# For every .svg we must have a pdf
+PICS=$(shell find . -iname \*svg \
+	| sed -e 's/svg/pdf/g' -e 's/\([^\]\)\([ \t:]\)/\1\\\\\2/g' \
+	| grep -v -e $(PICS_IGNORE) \
+	| grep -v -e neuropy_history_tuned )
+# For history figure we need pngs due to crippled transparency suport
+# in poppler, so for now would rely on PNGs
+PICS+=$(shell [ -d neuropy_history_tuned ] && \
+	find neuropy_history_tuned/ -iname \*svg \
+	| sed -e 's/.svg/_sw.png/g' -e 's/\([^\]\)\([ \t:]\)/\1\\\\\2/g' \
+	| grep -v -e $(PICS_IGNORE))
+# Converted
+PICS_CONVERTED=
+#PICS+=$(PICS_CONVERTED)
+SVGIS=$(shell  find . -iname \*.svgtune | sed -e 's/.svgtune/_tuned/g')
+
+FMAKE := $(MAKE) -s -f $(lastword $(MAKEFILE_LIST))
+
+pics: $(SVGIS) $(PICS)
+
+clean::
+	rm $(PICS_CONVERTED)
+	for p in *.svg; do rm -f $${p%*.svg}.{pdf,eps,png}; done
+	rm -fr *_tuned
+
+.PHONY: ignore-%
+ignore-%:
+	@grep -q "^$*$$" .gitignore || { \
+	  echo "$*" >> .gitignore; echo "Ignore $@"; }
+
+
+#
+# SVGTune
+#
+%_tuned: %.svgtune %.svg
+	@echo "Splitting SVG using $<"
+# Use gqview to prevew svgs -- quite nice
+	@../tools/svgtune/svgtune $<
+# Touch it to adjust the timestamp so make does not think that we are
+# out of date later on
+	@touch "$@"
+# And assure that we have ignore ... cannot be in deps since would cause
+# regeneration over and over again
+	@$(MAKE) ignore-$@
+
+#
+# Inkscape rendered figures
+#
+%.pdf: %.svg ignore-%.pdf
+	@echo "Rendering $@"
+	@inkscape -z -f "$<" -A "$@"
+
+%.eps: %.svg ignore-%.eps
+	@echo "Rendering $@"
+	@inkscape -z -T -f "$<" -E "$@"
+
+%.png: %.svg ignore-%.png
+	@echo "Rendering $@"
+	@inkscape -z -f "$<" -e "$@" -d 150
+
+
+#
+# Rare xfig plots
+#
+%.pdf: %.fig ignore-%.pdf
+	@echo "Rendering $@"
+	@fig2dev -L pdf "$<" "$@"
+
+
+# PNG at slide width
+SLIDE_WIDTH=1024
+SLIDE_HEIGHT=768
+%_sw.png: %.svg ignore-%_sw.png
+	@echo "Rendering $@ at slide width of $(SLIDE_WIDTH)"
+	@inkscape -z -f "$<" -e "$@" --export-width=$(SLIDE_WIDTH)
+
+# Following two rules will try imagemagick's to convert an image to
+# the corresponding size...
+# TODO: figure out how to make them match for both jpg and png
+#       files as sources
+%_sw.png: %.jpg ignore-%_sw.png
+	@echo "Converting $@ at slide width of $(SLIDE_WIDTH)"
+	@convert -geometry $(SLIDE_WIDTH) "$<" "$@"
+
+%_sh.png: %.jpg ignore-%_sh.png
+	@echo "Converting $@ at slide height of $(SLIDE_HEIGHT)"
+	@convert -geometry x$(SLIDE_HEIGHT) "$<" "$@"
+
+%_15dpi.png: %.svg ignore-%_15dpi.png
+	@echo "Rendering $@"
+	@inkscape -z -f "$<" -e "$@" -d 15
+
+%_75dpi.png: %.svg ignore-%_75dpi.png
+	@echo "Rendering $@"
+	@inkscape -z -f "$<" -e "$@" -d 75
+
+%_600dpi.png: %.svg ignore-%_600dpi.png
+	@echo "Rendering $@"
+	@inkscape -z -f "$<" -e "$@" -d 600
+
+
+#
+# Dia rendered figures (mostly for historic/)
+#
+%.pdf: %.dia ignore-%.pdf
+	dia -e $@ $<
+%_w800.png: %.dia ignore-%_w800.png
+	dia -s 800 -e $@ $<
+
+# Some additional PICS to render not worth adding find command ;)
+all:: 
+
+.PHONY: all pics