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99 | 99 | \vspace{-.5em}
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100 | 100 | }
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101 | 101 |
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| 102 | +\newcommand{\ndcite}[1]{{\small #1}} |
102 | 103 | %%% User specified packages and stylesheets
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103 | 104 |
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104 | 105 | %%% Fallback definitions for Docutils-specific commands
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|
192 | 193 | OpenSesame is a graphical experiment builder for the social sciences.
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193 | 194 | \begin{itemize}[nolistsep,topsep=0em,leftmargin=1pc]
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194 | 195 | \item A comprehensive and intuitive graphical user interface
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195 |
| -\item Built-in WYSIWYG drawing tools for creating visual stimuli |
| 196 | +\item WYSIWYG drawing tools for creating visual stimuli |
196 | 197 | \item Cross-platform % compatibility (Windows, Linux, Mac OS)
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197 | 198 | \item Python scripting for complex tasks
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198 | 199 | \item A plug-in framework
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199 | 200 | \item Compatibility (through plug-ins) with commonly used devices:
|
200 |
| - \begin{itemize}[nolistsep,topsep=0em,leftmargin=1pc] |
201 |
| - \item The Eyelink series of eye trackers |
202 |
| - \item The Serial Response Box |
203 |
| - \item The Mantra object tracker |
204 |
| - \end{itemize} |
| 201 | + (e.g. Eyelink eye trackers, serial response boxes, Mantra object tracker) |
205 | 202 | \item Compatibility with popular Python libraries:
|
206 |
| - \begin{itemize}[nolistsep,topsep=0em,leftmargin=1pc] |
207 |
| - \item PsychoPy |
208 |
| - \item PyGame |
209 |
| - \item PyOpenGL |
210 |
| - \item OpenCV |
211 |
| - \item NumPy/ SciPy |
212 |
| - \end{itemize} |
| 203 | + PsychoPy, PyGame, PyOpenGL, etc. |
213 | 204 | \end{itemize}
|
214 | 205 | \includegraphics[width=\columnwidth]{../pics/opensesame_screenshot2.png}
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215 | 206 |
|
|
278 | 269 | \item share your processing workflows with the community
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279 | 270 | \end{itemize}
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280 | 271 | \includegraphics[width=\columnwidth]{nipype_arch.pdf}
|
281 |
| -Gorgolewski K, Burns CD, Madison C, Clark D, Halchenko YO, Waskom ML, Ghosh SS |
| 272 | +\ndcite{Gorgolewski K, Burns CD, Madison C, Clark D, Halchenko YO, Waskom ML, Ghosh SS |
282 | 273 | (2011) Nipype: a flexible, lightweight and extensible neuroimaging data
|
283 | 274 | processing framework in Python. Front. Neuroinform. 5:13.
|
284 |
| -doi: 10.3389/fninf.2011.00013 |
| 275 | +doi: 10.3389/fninf.2011.00013} |
285 | 276 |
|
286 | 277 |
|
287 | 278 | %___________________________________________________________________________
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|
310 | 301 |
|
311 | 302 | %___________________________________________________________________________
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312 | 303 |
|
313 |
| -\ndproject{NiTime}{http://nipy.org/nitime}{nitime_logo.pdf}{.2}{-0.25em}{0em} |
| 304 | +\ndproject{NiTime}{http://nipy.org/nitime}{nitime_logo.pdf}{.3}{-1.25em}{-3em} |
314 | 305 |
|
315 | 306 | Nitime is a library for time-series analysis of data from neuroscience
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316 | 307 | experiments. It contains a core of numerical algorithms for
|
|
326 | 317 | \item Event-related analysis (including OLS finitie impulse response).
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327 | 318 | \end{itemize}
|
328 | 319 | %\includegraphics[width=\columnwidth]{nitime_analysis.pdf}
|
329 |
| -\includegraphics[width=0.9\columnwidth]{nitime_network.pdf} |
| 320 | +%\includegraphics[width=0.9\columnwidth]{nitime_network.pdf} |
330 | 321 |
|
331 | 322 | %___________________________________________________________________________
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332 | 323 |
|
|
344 | 335 | \item Hyperalignment (Haxby et al 2011, Neuron)
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345 | 336 | \end{itemize}
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346 | 337 | \includegraphics[width=\columnwidth]{pymvpa_shot.pdf}
|
347 |
| - |
348 |
| -Hanke, M., Halchenko, Y. O., Sederberg, P. B., Hanson, S. J., Haxby, J. V. |
349 |
| -\& Pollmann, S. (2009). |
350 |
| -PyMVPA: A Python toolbox for multivariate pattern analysis of fMRI data. Neuroinformatics, 7, 37-53.\\ |
351 |
| -Haxby, J. V. , Guntupalli, J. S. , Connolly, A. C. , Halchenko, |
352 |
| -Y. O. , Conroy, B. R., Gobbini, M. I. , Hanke, M. and Ramadge, |
353 |
| -P. J. (2011). A Common, High-Dimensional Model of the Representational |
354 |
| -Space in Human Ventral Temporal Cortex. Neuron, 72, 404–416. |
| 338 | +\ndcite{Hanke, M., Halchenko, Y. O., Sederberg, P. B., Hanson, |
| 339 | + S. J., Haxby, J. V. \& Pollmann, S. (2009). |
| 340 | + PyMVPA: A Python toolbox for multivariate pattern analysis of fMRI data. Neuroinformatics, 7}\\ |
| 341 | +\ndcite{Haxby, J. V. , Guntupalli, J. S. , Connolly, A. C. , |
| 342 | + Halchenko, Y. O. , Conroy, B. R., Gobbini, M. I. , Hanke, M. and |
| 343 | + Ramadge, P. J. (2011). A Common, High-Dimensional Model of the |
| 344 | + Representational Space in Human Ventral Temporal Cortex. Neuron, |
| 345 | + 72.} |
355 | 346 |
|
356 | 347 | %___________________________________________________________________________
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357 | 348 |
|
|
372 | 363 | \item Links with other software like SPM, FSL, FreeSurfer, or CIVET
|
373 | 364 | \end{itemize}
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374 | 365 | \includegraphics[width=0.9\columnwidth]{../pics/brainvisa_screenshot.png}
|
375 |
| -D. Geffroy, D. Rivière, I. Denghien, N. Souedet, S. Laguitton, and |
376 |
| -Y. Cointepas. BrainVISA: a complete software platform for neuroimaging. |
377 |
| -In Python in Neuroscience workshop, Paris, Aug. 2011. |
| 366 | +\ndcite{D. Geffroy, D. Rivière, I. Denghien, N. Souedet, |
| 367 | + S. Laguitton, and Y. Cointepas. BrainVISA: a complete software |
| 368 | + platform for neuroimaging. In Python in Neuroscience workshop, |
| 369 | + Paris, Aug. 2011.} |
378 | 370 |
|
379 | 371 | %___________________________________________________________________________
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380 | 372 |
|
|
407 | 399 | \item Handles files transfers
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408 | 400 | \item Handles client disconnection while jobs are running on a remote resource
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409 | 401 | \end{itemize}
|
410 |
| - |
411 |
| -S. Laguitton, D. Rivière, T. Vincent, C. Fischer, D. Geffroy, N. Souedet, |
412 |
| -I. Denghien, and Y. Cointepas. Soma-workflow: a unified and simple interface |
413 |
| -to parallel computing resources. In MICCAI Workshop on High Performance and |
414 |
| -Distributed Computing for Medical Imaging, Toronto, Sep. 2011. |
| 402 | +\ndcite{S. Laguitton, D. Rivière, T. Vincent, C. Fischer, |
| 403 | + D. Geffroy, N. Souedet, I. Denghien, and |
| 404 | + Y. Cointepas. Soma-workflow: a unified and simple interface to |
| 405 | + parallel computing resources. In MICCAI Workshop on High Performance |
| 406 | + and Distributed Computing for Medical Imaging, Toronto, Sep. 2011} |
415 | 407 |
|
416 | 408 |
|
417 | 409 | %___________________________________________________________________________
|
|
446 | 438 | objects
|
447 | 439 | \item Interactive ROI drawing, voxel-based or on surfaces
|
448 | 440 | \end{itemize}
|
449 |
| -D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and Y. Cointepas. |
450 |
| -Anatomist: a python framework for interactive 3D visualization of neuroimaging |
451 |
| -data. In Python in Neuroscience workshop, 2011. |
452 |
| - |
| 441 | +\ndcite{D. Rivière, D. Geffroy, I. Denghien, N. Souedet, and |
| 442 | + Y. Cointepas. Anatomist: a python framework for interactive 3D |
| 443 | + visualization of neuroimaging data. In Python in Neuroscience |
| 444 | + workshop, 2011} |
453 | 445 | \end{multicols}
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454 | 446 | \end{document}
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455 | 447 |
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