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Merge branch 'nipy-dipy-nibabel' of git://github.com/matthew-brett/nipy-artwork
* 'nipy-dipy-nibabel' of git://github.com/matthew-brett/nipy-artwork: First pass at nibabel/dipy/nipy Conflicts: LICENSE
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LICENSE

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- Michael Hanke
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- Ariel Rokem
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- Jonathan Peirce
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- Matthew Brett
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- Eleftherios Garyfallidis
2022

flier/materials.rst

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Python in NeuroImaging
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======================
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7-
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Please provide for every sub-project a brief Description, list of
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Features, some nice figure if you have any. Hopefully eventually we
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get enough of tasty materials someone could compose into a flier.
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~~~~~~~
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http://nipy.org/nibabel
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.. figure:: ../pics/reggie.png
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:alt: nibabel
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:align: right
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:figwidth: 35%
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Nibabel provides read and write access to some common medical and neuroimaging
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file formats, including: ANALYZE_ (plain, SPM99, SPM2), GIFTI_, NIfTI1_, MINC_,
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as well as PAR/REC. NiBabel is the successor of PyNIfTI_.
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.. _ANALYZE: http://www.grahamwideman.com/gw/brain/analyze/formatdoc.htm
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.. _NIfTI1: http://nifti.nimh.nih.gov/nifti-1/
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.. _MINC: http://wiki.bic.mni.mcgill.ca/index.php/MINC
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.. _PyNIfTI: http://niftilib.sourceforge.net/pynifti/
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.. _GIFTI: http://www.nitrc.org/projects/gifti
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The various image format classes give full or selective access to header (meta)
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information and access to the image data is made available via NumPy arrays.
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Analysis
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--------
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NiPy
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~~~~
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http://nipy.org/nipy
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NIPY has algorithms for the analysis of neuroimaging data including:
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* General linear model statistical analysis
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* Combined slice time correction and motion correction
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* General image registration routines with flexible cost functions, optimizers
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and resampling schemes
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* Image segmentation
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* Basic visualization of results in 2D and 3D
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* Basic time series diagnostics
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* Clustering and activation pattern analysis across subjects
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Nipype
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~~~~~~
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~~~~
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http://nipy.org/dipy
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.. figure:: ../pics/dipy-banner.png
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:alt: nibabel
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:align: right
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:figwidth: 35%
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Dipy is an international, free and open soure software project for
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diffusion magnetic resonance imaging analysis.
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Dipy is multiplatform and will run under any standard operating system such as
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*Windows*, *Linux*, *Mac OS X*.
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Just some of our **state-of-the-art** applications are:
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- Reconstruction algorithms e.g. GQI, DTI
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- Tractography generation algorithms e.g. EuDX
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- Intelligent downsampling of tracks
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- Ultra fast tractography clustering
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- Resampling datasets with anisotropic voxels to isotropic
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- Visualizing multiple brains simultaneously
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- Finding track correspondence between different brains
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- Warping tractographies into another space e.g. MNI space
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- Reading many different file formats e.g. Trackvis or Nifti
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- Dealing with huge tractographies without memory restrictions
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- Playing with datasets interactively without storing
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- And much more and even more to come in next releases
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NiTime
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~~~~~~

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