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yaml fixes
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circle.yml

Lines changed: 18 additions & 12 deletions
Original file line numberDiff line numberDiff line change
@@ -27,8 +27,9 @@ test:
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FORCE_SPMMCR: 1
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FSL_COURSE_DATA: "$HOME/examples/fsl_course_data"
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FSLDIR: "$HOME/fsl/"
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PATH:"$HOME/fsl/bin:$PATH"
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LD_LIBRARY_PATH:'$HOME/fsl/lib FSLOUTPUTTYPE="NIFTI_GZ"'
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PATH: "$HOME/fsl/bin:$PATH"
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LD_LIBRARY_PATH: "$HOME/fsl/lib"
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FSLOUTPUTTYPE: "NIFTI_GZ"
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timeout: 2600
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- set -o pipefail && cd doc && make html 2>&1 | tee ~/log.txt
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- cat ~/log.txt && if grep -q "ERROR" ~/log.txt; then false; else true; fi
@@ -38,38 +39,43 @@ test:
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SPMMCRCMD: "$HOME/spm12/run_spm12.sh $HOME/mcr/v85/ script"
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FORCE_SPMMCR: 1
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FSLDIR: "$HOME/fsl/"
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PATH:"$HOME/fsl/bin:$PATH"
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LD_LIBRARY_PATH:'$HOME/fsl/lib FSLOUTPUTTYPE="NIFTI_GZ"'
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PATH: "$HOME/fsl/bin:$PATH"
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LD_LIBRARY_PATH: "$HOME/fsl/lib"
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FSLOUTPUTTYPE: "NIFTI_GZ"
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timeout: 1600
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- python ~/nipype/tools/run_examples.py fmri_fsl_feeds Linear l1pipeline:
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pwd: ../examples
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environment:
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FSLDIR: "$HOME/fsl/"
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PATH:"$HOME/fsl/bin:$PATH"
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LD_LIBRARY_PATH:'$HOME/fsl/lib FSLOUTPUTTYPE="NIFTI_GZ"'
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PATH: "$HOME/fsl/bin:$PATH"
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LD_LIBRARY_PATH: "$HOME/fsl/lib"
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FSLOUTPUTTYPE: "NIFTI_GZ"
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- python ~/nipype/tools/run_examples.py fmri_spm_dartel Linear level1 l2pipeline:
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pwd: ../examples
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environment:
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SPMMCRCMD: "$HOME/spm12/run_spm12.sh $HOME/mcr/v85/ script"
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FORCE_SPMMCR: 1
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FSLDIR: "$HOME/fsl/"
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PATH:"$HOME/fsl/bin:$PATH"
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LD_LIBRARY_PATH:'$HOME/fsl/lib FSLOUTPUTTYPE="NIFTI_GZ"'
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PATH: "$HOME/fsl/bin:$PATH"
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LD_LIBRARY_PATH: "$HOME/fsl/lib"
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FSLOUTPUTTYPE: "NIFTI_GZ"
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timeout: 1600
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- python ~/nipype/tools/run_examples.py fmri_fsl_reuse Linear level1_workflow:
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pwd: ../examples
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environment:
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FSLDIR: "$HOME/fsl/"
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PATH:"$HOME/fsl/bin:$PATH"
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LD_LIBRARY_PATH:'$HOME/fsl/lib FSLOUTPUTTYPE="NIFTI_GZ"'
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PATH: "$HOME/fsl/bin:$PATH"
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LD_LIBRARY_PATH: "$HOME/fsl/lib"
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FSLOUTPUTTYPE: "NIFTI_GZ"
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- python ~/nipype/tools/run_examples.py fmri_spm_nested Linear level1 l2pipeline:
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pwd: ../examples
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environment:
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SPMMCRCMD: "$HOME/spm12/run_spm12.sh $HOME/mcr/v85/ script"
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FORCE_SPMMCR: 1
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FSLDIR: "$HOME/fsl/"
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PATH:"$HOME/fsl/bin:$PATH"
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LD_LIBRARY_PATH:'$HOME/fsl/lib FSLOUTPUTTYPE="NIFTI_GZ"'
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PATH: "$HOME/fsl/bin:$PATH"
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LD_LIBRARY_PATH: "$HOME/fsl/lib"
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FSLOUTPUTTYPE: "NIFTI_GZ"
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general:
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