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kesshijordankesshijordan
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fixed syntax, line continuation
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‎nipype/interfaces/dtitk/registration.py

Lines changed: 31 additions & 31 deletions
Original file line numberDiff line numberDiff line change
@@ -185,8 +185,8 @@ class ComposeXfm(CommandLineDtitk):
185185
>>> node.inputs.in_df = 'im_warp.df.nii'
186186
>>> node.inputs.in_aff= 'im_affine.aff'
187187
>>> node.cmdline
188-
'dfRightComposeAffine -aff im_affine.aff -df im_warp.df.nii -out\
189-
im_warp.df_affdf.nii'
188+
'dfRightComposeAffine -aff im_affine.aff -df im_warp.df.nii -out'
189+
' im_warp.df_affdf.nii'
190190
>>> node.run() # doctest: +SKIP
191191
"""
192192
input_spec = ComposeXfmInputSpec
@@ -202,18 +202,18 @@ class affSymTensor3DVolInputSpec(CommandLineInputSpec):
202202
name_template="%s_affxfmd", keep_extension=True)
203203
transform = File(exists=True, argstr="-trans %s",
204204
xor=['target', 'translation', 'euler', 'deformation'],
205-
desc='transform to apply: specify an input transformation\
206-
file; parameters input will be ignored',)
205+
desc='transform to apply: specify an input transformation'
206+
' file; parameters input will be ignored',)
207207
interpolation = traits.Enum('LEI', 'EI', usedefault=True,
208208
argstr="-interp %s",
209209
desc='Log Euclidean/Euclidean Interpolation')
210210
reorient = traits.Enum('PPD', 'NO', 'FS', argstr='-reorient %s',
211-
usedefault=True, desc='Reorientation strategy: \
212-
preservation of principal direction, no \
213-
reorientation, or finite strain')
211+
usedefault=True, desc='Reorientation strategy: '
212+
'preservation of principal direction, no '
213+
'reorientation, or finite strain')
214214
target = File(exists=True, argstr="-target %s", xor=['transform'],
215-
desc='output volume specification read from the target volume\
216-
if specified')
215+
desc='output volume specification read from the target '
216+
'volume if specified')
217217
translation = traits.Tuple((traits.Float(), traits.Float(),
218218
traits.Float()),
219219
desc='translation (x,y,z) in mm',
@@ -222,7 +222,7 @@ class affSymTensor3DVolInputSpec(CommandLineInputSpec):
222222
euler = traits.Tuple((traits.Float(), traits.Float(), traits.Float()),
223223
desc='(theta, phi, psi) in degrees',
224224
xor=['transform'], argstr='-euler %g %g %g')
225-
deformation = traits.Tuple(traits.Tuple((traits.Float(),) * 6, ...),
225+
deformation = traits.Tuple((traits.Float(),) * 6,
226226
desc='(xx,yy,zz,xy,yz,xz)', xor=['transform'],
227227
argstr='-deformation %g %g %g %g %g %g')
228228

@@ -243,7 +243,7 @@ class affSymTensor3DVol(CommandLineDtitk):
243243
>>> node.inputs.in_file = 'im1.nii'
244244
>>> node.inputs.transform = 'im_affine.aff'
245245
>>> node.cmdline
246-
'affineSymTensor3DVolume -in im1.nii -interp LEI -out im1_affxfmd.nii\
246+
'affineSymTensor3DVolume -in im1.nii -interp LEI -out im1_affxfmd.nii'
247247
-reorient PPD -trans im_affine.aff'
248248
>>> node.run() # doctest: +SKIP
249249
"""
@@ -260,15 +260,15 @@ class affScalarVolInputSpec(CommandLineInputSpec):
260260
name_template="%s_affxfmd", keep_extension=True)
261261
transform = File(exists=True, argstr="-trans %s",
262262
xor=['target', 'translation', 'euler', 'deformation'],
263-
desc='transform to apply: specify an input transformation\
264-
file; parameters input will be ignored',)
263+
desc='transform to apply: specify an input transformation'
264+
' file; parameters input will be ignored',)
265265
interpolation = traits.Enum('trilinear', 'NN',
266266
usedefault=True, argstr="-interp %s",
267-
desc='trilinear or nearest neighbor\
268-
interpolation')
267+
desc='trilinear or nearest neighbor'
268+
' interpolation')
269269
target = File(exists=True, argstr="-target %s", xor=['transform'],
270-
desc='output volume specification read from the target volume\
271-
if specified')
270+
desc='output volume specification read from the target '
271+
'volume if specified')
272272
translation = traits.Tuple((traits.Float(), traits.Float(),
273273
traits.Float()),
274274
desc='translation (x,y,z) in mm',
@@ -277,7 +277,7 @@ class affScalarVolInputSpec(CommandLineInputSpec):
277277
euler = traits.Tuple((traits.Float(), traits.Float(), traits.Float()),
278278
desc='(theta, phi, psi) in degrees',
279279
xor=['transform'], argstr='-euler %g %g %g')
280-
deformation = traits.Tuple(traits.Tuple((traits.Float(),) * 6, ...),
280+
deformation = traits.Tuple((traits.Float(),) * 6,
281281
desc='(xx,yy,zz,xy,yz,xz)', xor=['transform'],
282282
argstr='-deformation %g %g %g %g %g %g')
283283

@@ -298,8 +298,8 @@ class affScalarVol(CommandLineDtitk):
298298
>>> node.inputs.in_file = 'im1.nii'
299299
>>> node.inputs.transform = 'im_affine.aff'
300300
>>> node.cmdline
301-
'affineScalarVolume -in im1.nii -interp 0 -out im1_affxfmd.nii -trans\
302-
im_affine.aff'
301+
'affineScalarVolume -in im1.nii -interp 0 -out im1_affxfmd.nii -trans'
302+
' im_affine.aff'
303303
>>> node.run() # doctest: +SKIP
304304
"""
305305
input_spec = affScalarVolInputSpec
@@ -325,12 +325,12 @@ class diffeoSymTensor3DVolInputSpec(CommandLineInputSpec):
325325
argstr="-interp %s",
326326
desc='Log Euclidean/Euclidean Interpolation')
327327
reorient = traits.Enum('PPD', 'FS', argstr='-reorient %s',
328-
usedefault=True, desc='Reorientation strategy: \
329-
preservation of principal direction or finite \
330-
strain')
328+
usedefault=True, desc='Reorientation strategy: '
329+
'preservation of principal direction or finite '
330+
'strain')
331331
target = File(exists=True, argstr="-target %s", xor=['voxel_size'],
332-
desc='output volume specification read from the target volume\
333-
if specified')
332+
desc='output volume specification read from the target '
333+
'volume if specified')
334334
voxel_size = traits.Tuple((traits.Float(), traits.Float(), traits.Float()),
335335
desc='xyz voxel size (superseded by target)',
336336
argstr="-vsize %g %g %g", xor=['target'])
@@ -357,8 +357,8 @@ class diffeoSymTensor3DVol(CommandLineDtitk):
357357
>>> node.inputs.in_file = 'im1.nii'
358358
>>> node.inputs.transform = 'im_warp.df.nii'
359359
>>> node.cmdline
360-
'deformationSymTensor3DVolume -df FD -in im1.nii -interp LEI -out\
361-
im1_diffeoxfmd.nii -reorient PPD -trans im_warp.df.nii'
360+
'deformationSymTensor3DVolume -df FD -in im1.nii -interp LEI -out'
361+
' im1_diffeoxfmd.nii -reorient PPD -trans im_warp.df.nii'
362362
>>> node.run() # doctest: +SKIP
363363
"""
364364

@@ -381,8 +381,8 @@ class diffeoScalarVolInputSpec(CommandLineInputSpec):
381381
transform = transform = File(exists=True, argstr="-trans %s",
382382
mandatory=True, desc='transform to apply')
383383
target = File(exists=True, argstr="-target %s", xor=['voxel_size'],
384-
desc='output volume specification read from the target volume\
385-
if specified')
384+
desc='output volume specification read from the target '
385+
'volume if specified')
386386
voxel_size = traits.Tuple((traits.Float(), traits.Float(), traits.Float()),
387387
desc='xyz voxel size (superseded by target)',
388388
argstr="-vsize %g %g %g", xor=['target'])
@@ -413,8 +413,8 @@ class diffeoScalarVol(CommandLineDtitk):
413413
>>> node.inputs.in_file = 'im1.nii'
414414
>>> node.inputs.transform = 'im_warp.df.nii'
415415
>>> node.cmdline
416-
'deformationScalarVolume -in im1.nii -interp 0 -out im1_diffeoxfmd.nii\
417-
-trans im_warp.df.nii'
416+
'deformationScalarVolume -in im1.nii -interp 0 -out im1_diffeoxfmd.nii'
417+
' -trans im_warp.df.nii'
418418
>>> node.run() # doctest: +SKIP
419419
"""
420420

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