FIX: Adds distance to autorecon2.py.

Author: David Ellis

nipype/workflows/smri/freesurfer/autorecon1.py

@@ -35,7 +35,7 @@ def checkT1s(T1_files, cw256=False):
     resample_type = 'cubic' if len(T1_files) > 1 else 'interpolate'
     return T1_files, cw256, resample_type, origvol_names
 
-def create_AutoRecon1(name="AutoRecon1", longitudinal=False, distance=200,
+def create_AutoRecon1(name="AutoRecon1", longitudinal=False, distance=None,
                       custom_atlas=None, plugin_args=None, shrink=None, stop=None,
                       fsvernum=5.3):
     """Creates the AutoRecon1 workflow in nipype.

nipype/workflows/smri/freesurfer/autorecon2.py

@@ -12,7 +12,7 @@ def copy_ltas(in_file, subjects_dir, subject_id, long_template):
 
 def create_AutoRecon2(name="AutoRecon2", longitudinal=False,
                       plugin_args=None, fsvernum=5.3,
-                          stop=None, shrink=None):
+                      stop=None, shrink=None, distance=None):
     # AutoRecon2
     # Workflow
     ar2_wf = pe.Workflow(name=name)

nipype/workflows/smri/freesurfer/recon.py

@@ -260,7 +260,7 @@ def checkarg(arg, default):
                                              ('awk_file', 'inputspec.awk_file')])])
     # create AutoRecon2
     ar2_wf, ar2_outputs = create_AutoRecon2(plugin_args=plugin_args, fsvernum=fsvernum,
-                                            stop=stop, shrink=shrink)
+                                            stop=stop, shrink=shrink, distance=distance)
     # connect inputs for AutoRecon2
     reconall.connect([(inputspec, ar2_wf, [('num_threads', 'inputspec.num_threads')]),
                       (config_node, ar2_wf, [('reg_template_withskull',