PEP8 compliance for model.py (100%)

Author: Clark

nipype/interfaces/spm/model.py

@@ -399,12 +399,16 @@ def _make_matlab_command(self, _):
                 for c0, cond in enumerate(contrast.conditions):
                     script += ("idx = strmatch('%s',condnames,'exact');\n"
                                % (cond))
-                    script += "if isempty(idx), throw(MException('CondName:Chk', sprintf('Condition %%s not found in design','%s'))); end;\n" % cond
+                    script += (("if isempty(idx), throw(MException("
+                                "'CondName:Chk', sprintf('Condition %%s not "
+                                "found in design','%s'))); end;\n") % cond)
                     if contrast.sessions:
                         for sno, sw in enumerate(contrast.sessions):
                             script += ("sidx = find(condsess(idx)==%d);\n"
                                        % (sno + 1))
-                            script += "consess{%d}.tcon.convec(idx(sidx)) = %f;\n" % (i + 1, sw * contrast.weights[c0])
+                            script += (("consess{%d}.tcon.convec(idx(sidx)) "
+                                        "= %f;\n")
+                                       % (i + 1, sw * contrast.weights[c0]))
                     else:
                         script += ("consess{%d}.tcon.convec(idx) = %f;\n"
                                    % (i + 1, contrast.weights[c0]))
@@ -419,7 +423,9 @@ def _make_matlab_command(self, _):
                         Exception("Contrast Estimate: could not get index of"
                                   " T contrast. probably not defined prior "
                                   "to the F contrasts")
-                    script += "consess{%d}.fcon.convec{%d} = consess{%d}.tcon.convec;\n" % (i + 1, cl0 + 1, tidx + 1)
+                    script += (("consess{%d}.fcon.convec{%d} = "
+                                "consess{%d}.tcon.convec;\n")
+                               % (i + 1, cl0 + 1, tidx + 1))
         script += "jobs{1}.stats{1}.con.consess = consess;\n"
         script += ("if strcmp(spm('ver'),'SPM8'), spm_jobman('initcfg');"
                    "jobs=spm_jobman('spm5tospm8',{jobs});end\n")
@@ -578,7 +584,9 @@ def _make_matlab_command(self, _):
 Zth = Z(Z >= cluster_forming_thr);
 
 """
-        script += "spm_write_filtered(Zth,XYZth,stat_map_vol.dim',stat_map_vol.mat,'thresholded map', '%s');\n" % self._gen_pre_topo_map_filename()
+        script += (("spm_write_filtered(Zth,XYZth,stat_map_vol.dim',"
+                    "stat_map_vol.mat,'thresholded map', '%s');\n")
+                   % self._gen_pre_topo_map_filename())
         script += """
 max_size = 0;
 max_size_index = 0;
@@ -590,7 +598,8 @@ def _make_matlab_command(self, _):
 else
     if use_topo_fdr
         V2R        = 1/prod(FWHM(stat_map_vol.dim > 1));
-        [uc,Pc,ue] = spm_uc_clusterFDR(cluster_extent_p_fdr_thr,df,STAT,R,n,Z,XYZ,V2R,cluster_forming_thr);
+        [uc,Pc,ue] = spm_uc_clusterFDR(cluster_extent_p_fdr_thr,df,\
+STAT,R,n,Z,XYZ,V2R,cluster_forming_thr);
     end
 
     voxel_labels = spm_clusters(XYZth);
@@ -601,8 +610,10 @@ def _make_matlab_command(self, _):
 
     for i = 1:nclusters
         cluster_size = sum(voxel_labels==i);
-         if cluster_size > extent_threshold && (~use_topo_fdr || (cluster_size - uc) > -1)
-            thresholded_XYZ = cat(2, thresholded_XYZ, XYZth(:,voxel_labels == i));
+         if cluster_size > extent_threshold && (~use_topo_fdr || \
+(cluster_size - uc) > -1)
+            thresholded_XYZ = cat(2, thresholded_XYZ, \
+XYZth(:,voxel_labels == i));
             thresholded_Z = cat(2, thresholded_Z, Zth(voxel_labels == i));
             th_nclusters = th_nclusters + 1;
          end
@@ -636,13 +647,16 @@ def _make_matlab_command(self, _):
 fprintf('cluster_forming_thr = %f\\n',cluster_forming_thr);
 
 """
-        script += "spm_write_filtered(thresholded_Z,thresholded_XYZ,stat_map_vol.dim',stat_map_vol.mat,'thresholded map', '%s');\n" % self._gen_thresholded_map_filename()
+        script += (("spm_write_filtered(thresholded_Z,thresholded_XYZ,"
+                    "stat_map_vol.dim',stat_map_vol.mat,'thresholded map',"
+                    " '%s');\n") % self._gen_thresholded_map_filename())
 
         return script
 
     def aggregate_outputs(self, runtime=None):
         outputs = self._outputs()
-        setattr(outputs, 'thresholded_map', self._gen_thresholded_map_filename())
+        setattr(outputs, 'thresholded_map',
+                self._gen_thresholded_map_filename())
         setattr(outputs, 'pre_topo_fdr_map', self._gen_pre_topo_map_filename())
         for line in runtime.stdout.split('\n'):
             if line.startswith("activation_forced = "):
@@ -735,7 +749,8 @@ def _make_matlab_command(self, _):
                 voxelwise_P_uncor = (1-spm_Ncdf(cluster_forming_thr)).^n
             case 'T'
                 VPs = (1 - spm_Tcdf(Zum,df(2))).^n;
-                voxelwise_P_uncor = (1 - spm_Tcdf(cluster_forming_thr,df(2))).^n
+                voxelwise_P_uncor = \
+(1 - spm_Tcdf(cluster_forming_thr,df(2))).^n
             case 'X'
                 VPs = (1-spm_Xcdf(Zum,df(2))).^n;
                 voxelwise_P_uncor = (1-spm_Xcdf(cluster_forming_thr,df(2))).^n
@@ -749,14 +764,17 @@ def _make_matlab_command(self, _):
 
 V2R        = 1/prod(FWHM(stat_map_vol.dim > 1));
 
-clusterwise_P_RF = spm_P_RF(1,extent_threshold*V2R,cluster_forming_thr,df,STAT,R,n)
+clusterwise_P_RF = \
+spm_P_RF(1,extent_threshold*V2R,cluster_forming_thr,df,STAT,R,n)
 
 [x,y,z] = ind2sub(size(stat_map_data),(1:numel(stat_map_data))');
 XYZ = cat(1, x', y', z');
 
-[u, CPs, ue] = spm_uc_clusterFDR(0.05,df,STAT,R,n,Z,XYZ,V2R,cluster_forming_thr);
+[u, CPs, ue] = \
+spm_uc_clusterFDR(0.05,df,STAT,R,n,Z,XYZ,V2R,cluster_forming_thr);
 
-clusterwise_P_FDR = spm_P_clusterFDR(extent_threshold*V2R,df,STAT,R,n,cluster_forming_thr,CPs')
+clusterwise_P_FDR = \
+spm_P_clusterFDR(extent_threshold*V2R,df,STAT,R,n,cluster_forming_thr,CPs')
 """
         return script
 
@@ -962,7 +980,8 @@ class PairedTTestDesign(FactorialDesign):
     --------
 
     >>> pttest = PairedTTestDesign()
-    >>> pttest.inputs.paired_files = [['cont1.nii','cont1a.nii'],['cont2.nii','cont2a.nii']]
+    >>> pttest.inputs.paired_files = [['cont1.nii','cont1a.nii'],\
+['cont2.nii','cont2a.nii']]
     >>> pttest.run() # doctest: +SKIP
     """