Adding to cmdline # doctest: +ELLIPSIS +ALLOW_UNICODE

Author: byvernault

nipype/interfaces/niftyseg/em.py

@@ -126,9 +126,9 @@ class EM(NiftySegCommand):
     >>> node = niftyseg.EM()
     >>> node.inputs.in_file = 'im1.nii'
     >>> node.inputs.no_prior = 4
-    >>> node.cmdline  # doctest: +SKIP
-    'seg_EM -in im1.nii -nopriors 4 -bc_out im1_bc_em.nii -out im1_em.nii \
--out_outlier im1_outlier_em.nii'
+    >>> node.cmdline  # doctest: +ELLIPSIS +ALLOW_UNICODE
+    'seg_EM -in im1.nii -nopriors 4 -bc_out .../im1_bc_em.nii \
+-out .../im1_em.nii -out_outlier .../im1_outlier_em.nii'
 
     """
     _cmd = get_custom_path('seg_EM')

nipype/interfaces/niftyseg/label_fusion.py

@@ -128,9 +128,9 @@ class LabelFusion(NiftySegCommand):
     >>> node.inputs.template_file = 'im3.nii'
     >>> node.inputs.template_num = 2
     >>> node.inputs.classifier_type = 'STEPS'
-    >>> node.cmdline  # doctest: +SKIP
+    >>> node.cmdline  # doctest: +ELLIPSIS +ALLOW_UNICODE
     'seg_LabFusion -in im1.nii -STEPS 2.000000 2 im2.nii im3.nii -out \
-im1_steps.nii'
+.../im1_steps.nii'
 
     """
     _cmd = get_custom_path('seg_LabFusion')
@@ -289,7 +289,7 @@ class CalcTopNCC(NiftySegCommand):
     >>> node.inputs.num_templates = 2
     >>> node.inputs.in_templates = ['im2.nii', 'im3.nii']
     >>> node.inputs.top_templates = 1
-    >>> node.cmdline  # doctest: +SKIP
+    >>> node.cmdline  # doctest: +ALLOW_UNICODE
     'seg_CalcTopNCC -target im1.nii -templates 2 im2.nii im3.nii -n 1'
 
     """

nipype/interfaces/niftyseg/lesions.py

@@ -108,8 +108,8 @@ class FillLesions(NiftySegCommand):
     >>> node = niftyseg.FillLesions()
     >>> node.inputs.in_file = 'im1.nii'
     >>> node.inputs.lesion_mask = 'im2.nii'
-    >>> node.cmdline  # doctest: +SKIP
-    'seg_FillLesions -i im1.nii -l im2.nii -o im1_lesions_filled.nii'
+    >>> node.cmdline  # doctest: +ELLIPSIS +ALLOW_UNICODE
+    'seg_FillLesions -i im1.nii -l im2.nii -o .../im1_lesions_filled.nii'
 
     """
     _cmd = get_custom_path('seg_FillLesions')

nipype/interfaces/niftyseg/maths.py

@@ -136,8 +136,8 @@ class UnaryMaths(MathsCommand):
     >>> node.inputs.in_file = 'im1.nii'
     >>> node.inputs.operation = 'sqrt'
     >>> node.inputs.output_datatype = 'float'
-    >>> node.cmdline  # doctest: +SKIP
-    'seg_maths im1.nii -sqrt -odt float im1_sqrt.nii.gz'
+    >>> node.cmdline  # doctest: +ELLIPSIS +ALLOW_UNICODE
+    'seg_maths im1.nii -sqrt -odt float .../im1_sqrt.nii.gz'
 
     """
     input_spec = UnaryMathsInput
@@ -224,8 +224,8 @@ class BinaryMaths(MathsCommand):
     >>> node.inputs.operation = 'sub'
     >>> node.inputs.operand_file = 'im2.nii'
     >>> node.inputs.output_datatype = 'float'
-    >>> node.cmdline  # doctest: +SKIP
-    'seg_maths im1.nii -odt float -sub im2.nii im1_sub.nii.gz'
+    >>> node.cmdline  # doctest: +ELLIPSIS +ALLOW_UNICODE
+    'seg_maths im1.nii -odt float -sub im2.nii .../im1_sub.nii.gz'
 
     """
     input_spec = BinaryMathsInput
@@ -299,8 +299,8 @@ class BinaryMathsInteger(MathsCommand):
     >>> node.inputs.operation = 'dil'
     >>> node.inputs.operand_value = 2
     >>> node.inputs.output_datatype = 'float'
-    >>> node.cmdline  # doctest: +SKIP
-    'seg_maths im1.nii -dil 2 im1_dil.nii -odt float'
+    >>> node.cmdline  # doctest: +ELLIPSIS +ALLOW_UNICODE
+    'seg_maths im1.nii -dil 2 .../im1_dil.nii -odt float'
 
     """
     input_spec = BinaryMathsInputInteger
@@ -370,8 +370,8 @@ class TupleMaths(MathsCommand):
     >>> node.inputs.operand_file1 = 'im2.nii'
     >>> node.inputs.operand_value2 = 2.0
     >>> node.inputs.output_datatype = 'float'
-    >>> node.cmdline  # doctest: +SKIP
-    'seg_maths im1.nii -lncc im2.nii 2.00000000 im1_lncc.nii -odt float'
+    >>> node.cmdline  # doctest: +ELLIPSIS +ALLOW_UNICODE
+    'seg_maths im1.nii -lncc im2.nii 2.00000000 .../im1_lncc.nii -odt float'
 
     """
     input_spec = TupleMathsInput
@@ -411,8 +411,9 @@ class Merge(MathsCommand):
     >>> node.inputs.merge_files = files
     >>> node.inputs.dimension = 2
     >>> node.inputs.output_datatype = 'float'
-    >>> node.cmdline  # doctest: +SKIP
-    'seg_maths im1.nii -merge 2 2 im2.nii im3.nii -odt float im1_merged.nii'
+    >>> node.cmdline  # doctest: +ELLIPSIS +ALLOW_UNICODE
+    'seg_maths im1.nii -merge 2 2 im2.nii im3.nii -odt float \
+.../im1_merged.nii'
 
     """
     input_spec = MergeInput

nipype/interfaces/niftyseg/patchmatch.py

@@ -105,8 +105,8 @@ class PatchMatch(NiftySegCommand):
     >>> node.inputs.in_file = 'im1.nii'
     >>> node.inputs.mask_file = 'im2.nii'
     >>> node.inputs.database_file = 'db.xml'
-    >>> node.cmdline  # doctest: +SKIP
-    'seg_PatchMatch -i im1.nii -m im2.nii -db db.xml -o im1_pm.nii'
+    >>> node.cmdline  # doctest: +ELLIPSIS +ALLOW_UNICODE
+    'seg_PatchMatch -i im1.nii -m im2.nii -db db.xml -o .../im1_pm.nii'
 
     """
     _cmd = get_custom_path('seg_PatchMatch')

nipype/interfaces/niftyseg/stats.py

@@ -132,7 +132,7 @@ class UnaryStats(StatsCommand):
     >>> node = niftyseg.UnaryStats()
     >>> node.inputs.in_file = 'im1.nii'
     >>> node.inputs.operation = 'v'
-    >>> node.cmdline  # doctest: +SKIP
+    >>> node.cmdline  # doctest: +ALLOW_UNICODE
     'seg_stats im1.nii -v'
 
     """
@@ -196,7 +196,7 @@ class BinaryStats(StatsCommand):
     >>> node.inputs.in_file = 'im1.nii'
     >>> node.inputs.operation = 'sa'
     >>> node.inputs.operand_value = 2.0
-    >>> node.cmdline  # doctest: +SKIP
+    >>> node.cmdline  # doctest: +ALLOW_UNICODE
     'seg_stats im1.nii -sa 2'
 
     """