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Create test image tags for docker #1536 
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‎docker/nipype_test_base/Dockerfile

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# Copyright (c) 2016, The developers of nipype
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# All rights reserved.
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#
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# Redistribution and use in source and binary forms, with or without
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# modification, are permitted provided that the following conditions are met:
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#
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# * Redistributions of source code must retain the above copyright notice, this
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# list of conditions and the following disclaimer.
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#
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# * Redistributions in binary form must reproduce the above copyright notice,
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# this list of conditions and the following disclaimer in the documentation
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# and/or other materials provided with the distribution.
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#
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# * Neither the name of crn_base nor the names of its
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# contributors may be used to endorse or promote products derived from
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# this software without specific prior written permission.
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#
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
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# FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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# OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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FROM neurodebian:latest
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MAINTAINER Nipype developers
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# Preparations
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RUN ln -snf /bin/bash /bin/sh
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ARG DEBIAN_FRONTEND=noninteractive
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RUN sed -i -e 's,main$,main contrib non-free,g' /etc/apt/sources.list.d/neurodebian.sources.list && \
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apt-get -y update && \
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apt-get install -y curl \
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git \
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xvfb \
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bzip2 \
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unzip \
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apt-utils \
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fusefat \
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graphviz \
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fsl-core && \
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rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/* && \
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echo ". /etc/fsl/fsl.sh" >> /etc/bash.bashrc
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ENV FSLDIR=/usr/share/fsl/5.0
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ENV FSLOUTPUTTYPE=NIFTI_GZ
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ENV PATH=/usr/lib/fsl/5.0:$PATH
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ENV FSLMULTIFILEQUIT=TRUE
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ENV POSSUMDIR=/usr/share/fsl/5.0
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ENV LD_LIBRARY_PATH=/usr/lib/fsl/5.0:$LD_LIBRARY_PATH
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ENV FSLTCLSH=/usr/bin/tclsh
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ENV FSLWISH=/usr/bin/wish
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# Install Matlab: from the good old install_spm_mcr.sh of @chrisfilo
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WORKDIR /opt
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RUN echo "destinationFolder=/opt/mcr" > mcr_options.txt && \
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echo "agreeToLicense=yes" >> mcr_options.txt && \
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echo "outputFile=/tmp/matlabinstall_log" >> mcr_options.txt && \
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echo "mode=silent" >> mcr_options.txt && \
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mkdir -p matlab_installer && \
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curl -sSL http://www.mathworks.com/supportfiles/downloads/R2015a/deployment_files/R2015a/installers/glnxa64/MCR_R2015a_glnxa64_installer.zip \
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-o matlab_installer/installer.zip && \
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unzip matlab_installer/installer.zip -d matlab_installer/ && \
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matlab_installer/install -inputFile mcr_options.txt && \
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rm -rf matlab_installer mcr_options.txt
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ENV SPMMCRCMD "/opt/spm12/run_spm12.sh /opt/mcr/v85/ script"
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ENV FORCE_SPMMCR 1
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# Install SPM
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RUN curl -sSL http://www.fil.ion.ucl.ac.uk/spm/download/restricted/utopia/dev/spm12_r6472_Linux_R2015a.zip -o spm12.zip && \
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unzip spm12.zip && \
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rm -rf spm12.zip
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CMD ["/bin/bash"]
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‎docker/nipype_test_py27/Dockerfile

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# Copyright (c) 2016, The developers of nipype
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# All rights reserved.
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#
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# Redistribution and use in source and binary forms, with or without
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# modification, are permitted provided that the following conditions are met:
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#
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# * Redistributions of source code must retain the above copyright notice, this
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# list of conditions and the following disclaimer.
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#
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# * Redistributions in binary form must reproduce the above copyright notice,
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# this list of conditions and the following disclaimer in the documentation
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# and/or other materials provided with the distribution.
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#
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# * Neither the name of crn_base nor the names of its
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# contributors may be used to endorse or promote products derived from
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# this software without specific prior written permission.
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#
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
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# FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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# OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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FROM nipype/nipype_test:base
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MAINTAINER Stanford Center for Reproducible Neuroscience <[email protected]>
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# Preparations
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RUN ln -snf /bin/bash /bin/sh
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WORKDIR /root
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# Install miniconda
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RUN curl -sSLO https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh && \
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/bin/bash Miniconda-latest-Linux-x86_64.sh -b -p /usr/local/miniconda && \
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rm Miniconda-latest-Linux-x86_64.sh
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ENV PATH /usr/local/miniconda/bin:$PATH
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# http://bugs.python.org/issue19846
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# > At the moment, setting "LANG=C" on a Linux system *fundamentally breaks Python 3*, and that's not OK.
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ENV LANG C.UTF-8
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# Add conda-forge channel in conda
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RUN conda config --add channels conda-forge
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# Create conda environment
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RUN conda install -y lockfile nipype
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CMD ["/bin/bash"]

‎docker/nipype_test_py34/Dockerfile

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# Copyright (c) 2016, The developers of the Stanford CRN
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# All rights reserved.
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#
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# Redistribution and use in source and binary forms, with or without
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# modification, are permitted provided that the following conditions are met:
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#
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# * Redistributions of source code must retain the above copyright notice, this
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# list of conditions and the following disclaimer.
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#
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# * Redistributions in binary form must reproduce the above copyright notice,
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# this list of conditions and the following disclaimer in the documentation
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# and/or other materials provided with the distribution.
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#
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# * Neither the name of crn_base nor the names of its
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# contributors may be used to endorse or promote products derived from
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# this software without specific prior written permission.
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#
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
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# FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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# OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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FROM nipype/testbase:latest
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MAINTAINER Stanford Center for Reproducible Neuroscience <[email protected]>
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# Preparations
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RUN ln -snf /bin/bash /bin/sh
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WORKDIR /root
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# Install miniconda
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RUN curl -sSLO https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh && \
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/bin/bash Miniconda-latest-Linux-x86_64.sh -b -p /usr/local/miniconda && \
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rm Miniconda-latest-Linux-x86_64.sh && \
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echo '#!/bin/bash' >> /etc/profile.d/nipype.sh && \
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echo 'export PATH=/usr/local/miniconda/bin:$PATH' >> /etc/profile.d/nipype.sh
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ENV PATH /usr/local/miniconda/bin:$PATH
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# http://bugs.python.org/issue19846
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# > At the moment, setting "LANG=C" on a Linux system *fundamentally breaks Python 3*, and that's not OK.
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ENV LANG C.UTF-8
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# Add conda-forge channel in conda
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RUN conda config --add channels conda-forge
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# Create conda environment
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RUN conda create -y -n nipypetests-2.7 lockfile nipype && \
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echo '#!/bin/bash' >> /etc/profile.d/nipype.sh && \
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echo '#!/bin/bash' >> /etc/bashrc && \
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echo 'source activate nipypetests-2.7' >> /etc/profile.d/nipype.sh
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# Create conda environment
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RUN conda create -y -n nipypetests-3.4 lockfile nipype python=3.4
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# Create conda environment
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RUN conda create -y -n nipypetests-3.5 lockfile nipype python=3.5
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# Install dipy
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RUN source activate nipypetests-2.7 && \
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pip install dipy && \
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source activate nipypetests-3.4 && \
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pip install dipy && \
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source activate nipypetests-3.5 && \
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pip install dipy
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RUN echo "source /etc/profile.d/nipype.sh" >> /etc/bash.bashrc
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CMD ["/bin/bash"]

‎docker/nipype_test_py35/Dockerfile

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# Copyright (c) 2016, The developers of the Stanford CRN
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# All rights reserved.
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#
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# Redistribution and use in source and binary forms, with or without
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# modification, are permitted provided that the following conditions are met:
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#
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# * Redistributions of source code must retain the above copyright notice, this
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# list of conditions and the following disclaimer.
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#
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# * Redistributions in binary form must reproduce the above copyright notice,
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# this list of conditions and the following disclaimer in the documentation
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# and/or other materials provided with the distribution.
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#
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# * Neither the name of crn_base nor the names of its
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# contributors may be used to endorse or promote products derived from
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# this software without specific prior written permission.
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#
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# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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# AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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# IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
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# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE LIABLE
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# FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
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# DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
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# SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
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# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY,
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# OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
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# OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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FROM nipype/testbase:latest
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MAINTAINER Stanford Center for Reproducible Neuroscience <[email protected]>
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# Preparations
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RUN ln -snf /bin/bash /bin/sh
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WORKDIR /root
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# Install miniconda
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RUN curl -sSLO https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh && \
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/bin/bash Miniconda-latest-Linux-x86_64.sh -b -p /usr/local/miniconda && \
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rm Miniconda-latest-Linux-x86_64.sh && \
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echo '#!/bin/bash' >> /etc/profile.d/nipype.sh && \
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echo 'export PATH=/usr/local/miniconda/bin:$PATH' >> /etc/profile.d/nipype.sh
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ENV PATH /usr/local/miniconda/bin:$PATH
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# http://bugs.python.org/issue19846
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# > At the moment, setting "LANG=C" on a Linux system *fundamentally breaks Python 3*, and that's not OK.
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ENV LANG C.UTF-8
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# Add conda-forge channel in conda
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RUN conda config --add channels conda-forge
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# Create conda environment
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RUN conda create -y -n nipypetests-2.7 lockfile nipype && \
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echo '#!/bin/bash' >> /etc/profile.d/nipype.sh && \
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echo '#!/bin/bash' >> /etc/bashrc && \
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echo 'source activate nipypetests-2.7' >> /etc/profile.d/nipype.sh
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# Create conda environment
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RUN conda create -y -n nipypetests-3.4 lockfile nipype python=3.4
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# Create conda environment
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RUN conda create -y -n nipypetests-3.5 lockfile nipype python=3.5
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# Install dipy
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RUN source activate nipypetests-2.7 && \
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pip install dipy && \
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source activate nipypetests-3.4 && \
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pip install dipy && \
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source activate nipypetests-3.5 && \
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pip install dipy
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RUN echo "source /etc/profile.d/nipype.sh" >> /etc/bash.bashrc
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CMD ["/bin/bash"]

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