Added and fixed tests

Author: chrisgorgo

nipype/interfaces/freesurfer/tests/test_auto_MS_LDA.py

@@ -14,12 +14,6 @@ def test_MS_LDA_inputs():
     sep=' ',
     argstr='-lda %s',
     ),
-    output_synth=dict(new_name='vol_synth_file',
-    mandatory=True,
-    xor=['vol_synth_file', 'output_synth'],
-    deprecated='0.8',
-    argstr='-synth %s',
-    ),
     vol_synth_file=dict(mandatory=True,
     argstr='-synth %s',
     xor=['vol_synth_file', 'output_synth'],

nipype/interfaces/fsl/model.py

@@ -1799,9 +1799,9 @@ class GLM(FSLCommand):
     Example
     -------
     >>> import nipype.interfaces.fsl as fsl
-    >>> glm = fsl.GLM(in_file='functional.nii', design='maps.nii')
+    >>> glm = fsl.GLM(in_file='functional.nii', design='maps.nii', output_type='NIFTI')
     >>> glm.cmdline
-    'fsl_glm -i functional.nii -d maps.nii -o functional_glm.txt'
+    'fsl_glm -i functional.nii -d maps.nii -o functional_glm.nii'
 
     """
     _cmd = 'fsl_glm'

nipype/interfaces/fsl/tests/test_auto_GLM.py

@@ -52,7 +52,7 @@ def test_GLM_inputs():
     out_file=dict(name_source='in_file',
     keep_extension=True,
     position=3,
-    name_template='%s_glm.txt',
+    name_template='%s_glm',
     argstr='-o %s',
     ),
     dat_norm=dict(argstr='--dat_norm',