File tree Expand file tree Collapse file tree 1 file changed +20
-0
lines changed Expand file tree Collapse file tree 1 file changed +20
-0
lines changed Original file line number Diff line number Diff line change @@ -360,6 +360,26 @@ class CompCor(BaseInterface):
360
360
"""
361
361
Interface with core CompCor computation, used in aCompCor and tCompCor
362
362
363
+ CompCor provides three pre-filter options, all of which include per-voxel
364
+ mean removal:
365
+ - polynomial: Legendre polynomial basis
366
+ - cosine: Discrete cosine basis
367
+ - False: mean-removal only
368
+
369
+ In the case of ``polynomial`` and ``cosine`` filters, a pre-filter file may
370
+ be saved with a row for each volume/timepoint, and a column for each
371
+ non-constant regressor.
372
+ If no non-constant (mean-removal) columns are used, this file may be empty.
373
+
374
+ If ``ignore_initial_volumes`` is set, then the specified number of initial
375
+ volumes are excluded both from pre-filtering and CompCor component
376
+ extraction.
377
+ Each column in the components and pre-filter files are prefixe with zeros
378
+ for each excluded volume so that the number of rows continues to match the
379
+ number of volumes in the input file.
380
+ In addition, for each excluded volume, a column is added to the pre-filter
381
+ file with a 1 in the corresponding row.
382
+
363
383
Example
364
384
-------
365
385
You can’t perform that action at this time.
0 commit comments