fix: cleaned up install script

Author: satra

Vagrantfile

@@ -1,15 +1,31 @@
 VAGRANTFILE_API_VERSION = "2"
 
 $script = <<SCRIPT
-echo I am provisioning...
-echo `whoami`
-sudo apt-get update -qq
+
+# Following section commented out as gridengine requires interactive
+# components
+# # Install neurodebian repo
+# bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh)
+#
+# # Install grid engine
+# sudo apt-get install -qq gridengine-master gridengine-exec gridengine-client gridengine-qmon
+# # Configure: http://wiki.unixh4cks.com/index.php/Setting_up_Sun_Grid_Engine_on_Ubuntu
+# sudo -u sgeadmin qconf -am vagrant
+# qconf -au vagrant users
+# qconf -as neuro
+# qconf -ahgrp @allhosts
+# qconf -aattr hostgroup hostlist neuro @allhosts
+# qconf -aq main.q
+# qconf -aattr queue hostlist @allhosts main.q
+# qconf -aattr queue slots "2, [neuro=3]" main.q
+
+# install anaconda
 wget http://repo.continuum.io/miniconda/Miniconda-2.2.2-Linux-x86_64.sh -O miniconda.sh
 chmod +x miniconda.sh
 ./miniconda.sh -b
-echo `whoami`
 echo "export PATH=$HOME/anaconda/bin:\\$PATH" >> .bashrc
-# sudo bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh)
+
+# install nipype dependencies
 $HOME/anaconda/bin/conda install --yes pip numpy scipy nose traits networkx
 $HOME/anaconda/bin/conda install --yes dateutil ipython-notebook
 $HOME/anaconda/bin/pip install nibabel --use-mirrors
@@ -23,6 +39,7 @@ Vagrant.configure(VAGRANTFILE_API_VERSION) do |config|
   config.vm.define :engine do |engine_config|
 
     engine_config.vm.box = "gridneuro"
+    #engine_config.vm.box_url = "http://files.vagrantup.com/precise64.box"
     engine_config.vm.box_url = "https://dl.dropboxusercontent.com/u/363467/precise64_neuro.box"
     engine_config.vm.network :forwarded_port, guest: 80, host: 8080