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miykaelmiykael
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FIX: PEP8 - E122 continuation line missing indentation or outdented
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18 files changed

+43
-43
lines changed

18 files changed

+43
-43
lines changed

‎build_docs.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -64,7 +64,7 @@ def finalize_options(self):
6464
# Distutils Command class for API generation
6565
class APIDocs(TempInstall):
6666
description = \
67-
"""generate API docs """
67+
"""generate API docs """
6868

6969
user_options = [
7070
('None', None, 'this command has no options'),

‎examples/smri_ants_build_template.py

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -58,14 +58,14 @@
5858
print("File previously downloaded {0}".format(localFilename))
5959

6060
input_images=[
61-
os.path.join(mydatadir,'01_T1_half.nii.gz'),
62-
os.path.join(mydatadir,'02_T1_half.nii.gz'),
63-
os.path.join(mydatadir,'03_T1_half.nii.gz')
61+
os.path.join(mydatadir,'01_T1_half.nii.gz'),
62+
os.path.join(mydatadir,'02_T1_half.nii.gz'),
63+
os.path.join(mydatadir,'03_T1_half.nii.gz')
6464
]
6565
input_passive_images=[
66-
{'INV_T1':os.path.join(mydatadir,'01_T1_inv_half.nii.gz')},
67-
{'INV_T1':os.path.join(mydatadir,'02_T1_inv_half.nii.gz')},
68-
{'INV_T1':os.path.join(mydatadir,'03_T1_inv_half.nii.gz')}
66+
{'INV_T1':os.path.join(mydatadir,'01_T1_inv_half.nii.gz')},
67+
{'INV_T1':os.path.join(mydatadir,'02_T1_inv_half.nii.gz')},
68+
{'INV_T1':os.path.join(mydatadir,'03_T1_inv_half.nii.gz')}
6969
]
7070

7171

‎examples/smri_ants_registration.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -49,8 +49,8 @@
4949
print("File previously downloaded {0}".format(localFilename))
5050

5151
input_images=[
52-
os.path.join(mydatadir,'01_T1_half.nii.gz'),
53-
os.path.join(mydatadir,'02_T1_half.nii.gz'),
52+
os.path.join(mydatadir,'01_T1_half.nii.gz'),
53+
os.path.join(mydatadir,'02_T1_half.nii.gz'),
5454
]
5555

5656
"""

‎examples/smri_antsregistration_build_template.py

Lines changed: 6 additions & 6 deletions
Original file line numberDiff line numberDiff line change
@@ -65,14 +65,14 @@
6565
"""
6666

6767
ListOfImagesDictionaries=[
68-
{'T1':os.path.join(mydatadir,'01_T1_half.nii.gz'),'INV_T1':os.path.join(mydatadir,'01_T1_inv_half.nii.gz'),'LABEL_MAP':os.path.join(mydatadir,'01_T1_inv_half.nii.gz')},
69-
{'T1':os.path.join(mydatadir,'02_T1_half.nii.gz'),'INV_T1':os.path.join(mydatadir,'02_T1_inv_half.nii.gz'),'LABEL_MAP':os.path.join(mydatadir,'02_T1_inv_half.nii.gz')},
70-
{'T1':os.path.join(mydatadir,'03_T1_half.nii.gz'),'INV_T1':os.path.join(mydatadir,'03_T1_inv_half.nii.gz'),'LABEL_MAP':os.path.join(mydatadir,'03_T1_inv_half.nii.gz')}
68+
{'T1':os.path.join(mydatadir,'01_T1_half.nii.gz'),'INV_T1':os.path.join(mydatadir,'01_T1_inv_half.nii.gz'),'LABEL_MAP':os.path.join(mydatadir,'01_T1_inv_half.nii.gz')},
69+
{'T1':os.path.join(mydatadir,'02_T1_half.nii.gz'),'INV_T1':os.path.join(mydatadir,'02_T1_inv_half.nii.gz'),'LABEL_MAP':os.path.join(mydatadir,'02_T1_inv_half.nii.gz')},
70+
{'T1':os.path.join(mydatadir,'03_T1_half.nii.gz'),'INV_T1':os.path.join(mydatadir,'03_T1_inv_half.nii.gz'),'LABEL_MAP':os.path.join(mydatadir,'03_T1_inv_half.nii.gz')}
7171
]
7272
input_passive_images=[
73-
{'INV_T1':os.path.join(mydatadir,'01_T1_inv_half.nii.gz')},
74-
{'INV_T1':os.path.join(mydatadir,'02_T1_inv_half.nii.gz')},
75-
{'INV_T1':os.path.join(mydatadir,'03_T1_inv_half.nii.gz')}
73+
{'INV_T1':os.path.join(mydatadir,'01_T1_inv_half.nii.gz')},
74+
{'INV_T1':os.path.join(mydatadir,'02_T1_inv_half.nii.gz')},
75+
{'INV_T1':os.path.join(mydatadir,'03_T1_inv_half.nii.gz')}
7676
]
7777

7878
"""

‎nipype/info.py

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -69,7 +69,7 @@ def get_nipype_gitversion():
6969
# README.txt, so that it shows up nicely on PyPI. So please remember to edit
7070
# it only in one place and sync it correctly.
7171
long_description = \
72-
"""
72+
"""
7373
========================================================
7474
NIPYPE: Neuroimaging in Python: Pipelines and Interfaces
7575
========================================================

‎nipype/interfaces/cmtk/cmtk.py

Lines changed: 4 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -545,13 +545,13 @@ def _list_outputs(self):
545545
if self.inputs.count_region_intersections:
546546
outputs['matrix_files'] = [out_matrix_file, out_intersection_matrix_file]
547547
outputs['matlab_matrix_files'] = [outputs['matrix_mat_file'],
548-
outputs['mean_fiber_length_matrix_mat_file'], outputs['median_fiber_length_matrix_mat_file'],
549-
outputs['fiber_length_std_matrix_mat_file'], outputs['intersection_matrix_mat_file']]
548+
outputs['mean_fiber_length_matrix_mat_file'], outputs['median_fiber_length_matrix_mat_file'],
549+
outputs['fiber_length_std_matrix_mat_file'], outputs['intersection_matrix_mat_file']]
550550
else:
551551
outputs['matrix_files'] = [out_matrix_file]
552552
outputs['matlab_matrix_files'] = [outputs['matrix_mat_file'],
553-
outputs['mean_fiber_length_matrix_mat_file'], outputs['median_fiber_length_matrix_mat_file'],
554-
outputs['fiber_length_std_matrix_mat_file']]
553+
outputs['mean_fiber_length_matrix_mat_file'], outputs['median_fiber_length_matrix_mat_file'],
554+
outputs['fiber_length_std_matrix_mat_file']]
555555

556556
outputs['filtered_tractography'] = op.abspath(endpoint_name + '_streamline_final.trk')
557557
outputs['filtered_tractography_by_intersections'] = op.abspath(endpoint_name + '_intersections_streamline_final.trk')

‎nipype/interfaces/cmtk/parcellation.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -590,7 +590,7 @@ def _list_outputs(self):
590590
self._gen_outfilename('nii.gz', 'ROI'))
591591
if(self.inputs.dilation==True):
592592
outputs['roiv_file'] = op.abspath(self._gen_outfilename(
593-
'nii.gz', 'ROIv'))
593+
'nii.gz', 'ROIv'))
594594
outputs['white_matter_mask_file'] = op.abspath('fsmask_1mm.nii.gz')
595595
outputs['cc_unknown_file'] = op.abspath('cc_unknown.nii.gz')
596596
outputs['ribbon_file'] = op.abspath('ribbon.nii.gz')
@@ -599,7 +599,7 @@ def _list_outputs(self):
599599
'ROI_HR_th.nii.gz')
600600
if(self.inputs.dilation==True):
601601
outputs['dilated_roi_file_in_structural_space'] = op.abspath(
602-
'ROIv_HR_th.nii.gz')
602+
'ROIv_HR_th.nii.gz')
603603
return outputs
604604

605605
def _gen_outfilename(self, ext, prefix='ROI'):

‎nipype/interfaces/freesurfer/tests/test_utils.py

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -121,7 +121,7 @@ def test_surfsmooth():
121121

122122
# Test the command line
123123
yield assert_equal, smooth.cmdline, \
124-
("mri_surf2surf --cortex --fwhm 5.0000 --hemi lh --sval %s --tval %s/lh.a_smooth%d.nii --s fsaverage"%
124+
("mri_surf2surf --cortex --fwhm 5.0000 --hemi lh --sval %s --tval %s/lh.a_smooth%d.nii --s fsaverage"%
125125
(surf, cwd, fwhm))
126126

127127
# Test identity
@@ -154,7 +154,7 @@ def test_surfxfm():
154154

155155
# Test the command line
156156
yield assert_equal, xfm.cmdline, \
157-
("mri_surf2surf --hemi lh --tval %s/lh.a.fsaverage.nii --sval %s --srcsubject my_subject --trgsubject fsaverage"%
157+
("mri_surf2surf --hemi lh --tval %s/lh.a.fsaverage.nii --sval %s --srcsubject my_subject --trgsubject fsaverage"%
158158
(cwd, surf))
159159

160160
# Test identity

‎nipype/interfaces/fsl/model.py

Lines changed: 5 additions & 5 deletions
Original file line numberDiff line numberDiff line change
@@ -68,19 +68,19 @@ class Level1DesignInputSpec(BaseInterfaceInputSpec):
6868
traits.List(
6969
traits.Either(traits.Tuple(traits.Str,
7070
traits.Enum(
71-
'T'),
71+
'T'),
7272
traits.List(
73-
traits.Str),
73+
traits.Str),
7474
traits.List(
7575
traits.Float)),
7676
traits.Tuple(
7777
traits.Str,
7878
traits.Enum(
79-
'T'),
79+
'T'),
8080
traits.List(
81-
traits.Str),
81+
traits.Str),
8282
traits.List(
83-
traits.Float),
83+
traits.Float),
8484
traits.List(
8585
traits.Float)))))),
8686
desc="List of contrasts with each contrast being a list of the form - \

‎nipype/interfaces/fsl/tests/test_dti.py

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -440,7 +440,7 @@ def test_tbss_skeleton():
440440
# First by implicit argument
441441
skeletor.inputs.skeleton_file = True
442442
yield assert_equal, skeletor.cmdline, \
443-
"tbss_skeleton -i a.nii -o %s"%os.path.join(newdir, "a_skeleton.nii")
443+
"tbss_skeleton -i a.nii -o %s"%os.path.join(newdir, "a_skeleton.nii")
444444

445445
# Now with a specific name
446446
skeletor.inputs.skeleton_file = "old_boney.nii"
@@ -459,14 +459,14 @@ def test_tbss_skeleton():
459459

460460
# Now we get a command line
461461
yield assert_equal, bones.cmdline, \
462-
"tbss_skeleton -i a.nii -p 0.200 b.nii %s b.nii %s"%(Info.standard_image("LowerCingulum_1mm.nii.gz"),
462+
"tbss_skeleton -i a.nii -p 0.200 b.nii %s b.nii %s"%(Info.standard_image("LowerCingulum_1mm.nii.gz"),
463463
os.path.join(newdir, "b_skeletonised.nii"))
464464

465465
# Can we specify a mask?
466466
bones.inputs.use_cingulum_mask = Undefined
467467
bones.inputs.search_mask_file = "a.nii"
468468
yield assert_equal, bones.cmdline, \
469-
"tbss_skeleton -i a.nii -p 0.200 b.nii a.nii b.nii %s"%os.path.join(newdir, "b_skeletonised.nii")
469+
"tbss_skeleton -i a.nii -p 0.200 b.nii a.nii b.nii %s"%os.path.join(newdir, "b_skeletonised.nii")
470470

471471
# Looks good; clean up
472472
clean_directory(newdir, olddir)

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