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josephmjeeffigies
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add test
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nipype/interfaces/fsl/tests/test_auto_Eddy.py

Lines changed: 12 additions & 19 deletions
Original file line numberDiff line numberDiff line change
@@ -17,7 +17,7 @@ def test_Eddy_inputs():
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field_mat=dict(argstr="--field_mat=%s", extensions=None,),
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flm=dict(argstr="--flm=%s", usedefault=True,),
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fudge_factor=dict(argstr="--ff=%s", usedefault=True,),
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fwhm=dict(argstr="--fwhm=%s",),
20+
fwhm=dict(argstr="--fwhm=%s", usedefault=True,),
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in_acqp=dict(argstr="--acqp=%s", extensions=None, mandatory=True,),
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in_bval=dict(argstr="--bvals=%s", extensions=None, mandatory=True,),
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in_bvec=dict(argstr="--bvecs=%s", extensions=None, mandatory=True,),
@@ -32,11 +32,10 @@ def test_Eddy_inputs():
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interp=dict(argstr="--interp=%s", usedefault=True,),
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is_shelled=dict(argstr="--data_is_shelled",),
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json=dict(
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argstr="--json=%s",
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min_ver="6.0.1",
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requires=["mporder"],
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xor=["slice_order"],
35+
argstr="--json=%s", min_ver="6.0.1", requires=["mporder"], xor=["slspec"],
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),
37+
mb=dict(argstr="--mb=%s", min_ver="5.0.10",),
38+
mb_offs=dict(argstr="--mb_offs=%s", min_ver="5.0.10", requires=["mb"],),
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mbs_ksp=dict(
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argstr="--mbs_ksp=%smm",
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min_ver="6.0.1",
@@ -53,11 +52,7 @@ def test_Eddy_inputs():
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requires=["estimate_move_by_susceptibility"],
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),
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method=dict(argstr="--resamp=%s", usedefault=True,),
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mporder=dict(argstr="--mporder=%s", min_ver="5.0.11", requires=["use_cuda"],),
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multiband_factor=dict(argstr="--mb=%s", min_ver="5.0.10",),
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multiband_offset=dict(
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argstr="--mb_offs=%d", min_ver="5.0.10", requires=["multiband_factor"],
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),
55+
mporder=dict(argstr="--mporder=%s", min_ver="5.0.11",),
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niter=dict(argstr="--niter=%s", usedefault=True,),
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num_threads=dict(nohash=True, usedefault=True,),
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nvoxhp=dict(argstr="--nvoxhp=%s", usedefault=True,),
@@ -70,20 +65,18 @@ def test_Eddy_inputs():
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output_type=dict(),
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repol=dict(argstr="--repol",),
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residuals=dict(argstr="--residuals", min_ver="5.0.10",),
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session=dict(argstr="--session=%s", extensions=None,),
74-
slice2vol_interp=dict(
68+
s2v_interp=dict(
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argstr="--s2v_interp=%s", min_ver="5.0.11", requires=["mporder"],
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),
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slice2vol_lambda=dict(
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argstr="--s2v_lambda=%d", min_ver="5.0.11", requires=["mporder"],
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),
80-
slice2vol_niter=dict(
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argstr="--s2v_niter=%d", min_ver="5.0.11", requires=["mporder"],
71+
s2v_lambda=dict(agstr="--s2v_lambda", min_ver="5.0.11", requires=["mporder"],),
72+
s2v_niter=dict(
73+
argstr="--s2v_niter=%s", min_ver="5.0.11", requires=["mporder"],
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),
83-
slice_order=dict(
75+
session=dict(argstr="--session=%s", extensions=None,),
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slm=dict(argstr="--slm=%s", usedefault=True,),
77+
slspec=dict(
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argstr="--slspec=%s", min_ver="5.0.11", requires=["mporder"], xor=["json"],
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),
86-
slm=dict(argstr="--slm=%s", usedefault=True,),
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use_cuda=dict(),
8881
)
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inputs = Eddy.input_spec()

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