@@ -17,7 +17,7 @@ def test_Eddy_inputs():
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field_mat = dict (argstr = "--field_mat=%s" , extensions = None ,),
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flm = dict (argstr = "--flm=%s" , usedefault = True ,),
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fudge_factor = dict (argstr = "--ff=%s" , usedefault = True ,),
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- fwhm = dict (argstr = "--fwhm=%s" ,),
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+ fwhm = dict (argstr = "--fwhm=%s" , usedefault = True , ),
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in_acqp = dict (argstr = "--acqp=%s" , extensions = None , mandatory = True ,),
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in_bval = dict (argstr = "--bvals=%s" , extensions = None , mandatory = True ,),
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in_bvec = dict (argstr = "--bvecs=%s" , extensions = None , mandatory = True ,),
@@ -32,11 +32,10 @@ def test_Eddy_inputs():
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interp = dict (argstr = "--interp=%s" , usedefault = True ,),
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is_shelled = dict (argstr = "--data_is_shelled" ,),
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json = dict (
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- argstr = "--json=%s" ,
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- min_ver = "6.0.1" ,
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- requires = ["mporder" ],
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- xor = ["slice_order" ],
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+ argstr = "--json=%s" , min_ver = "6.0.1" , requires = ["mporder" ], xor = ["slspec" ],
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),
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+ mb = dict (argstr = "--mb=%s" , min_ver = "5.0.10" ,),
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+ mb_offs = dict (argstr = "--mb_offs=%s" , min_ver = "5.0.10" , requires = ["mb" ],),
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mbs_ksp = dict (
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argstr = "--mbs_ksp=%smm" ,
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min_ver = "6.0.1" ,
@@ -53,11 +52,7 @@ def test_Eddy_inputs():
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requires = ["estimate_move_by_susceptibility" ],
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),
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method = dict (argstr = "--resamp=%s" , usedefault = True ,),
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- mporder = dict (argstr = "--mporder=%s" , min_ver = "5.0.11" , requires = ["use_cuda" ],),
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- multiband_factor = dict (argstr = "--mb=%s" , min_ver = "5.0.10" ,),
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- multiband_offset = dict (
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- argstr = "--mb_offs=%d" , min_ver = "5.0.10" , requires = ["multiband_factor" ],
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- ),
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+ mporder = dict (argstr = "--mporder=%s" , min_ver = "5.0.11" ,),
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niter = dict (argstr = "--niter=%s" , usedefault = True ,),
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num_threads = dict (nohash = True , usedefault = True ,),
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nvoxhp = dict (argstr = "--nvoxhp=%s" , usedefault = True ,),
@@ -70,20 +65,18 @@ def test_Eddy_inputs():
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output_type = dict (),
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repol = dict (argstr = "--repol" ,),
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residuals = dict (argstr = "--residuals" , min_ver = "5.0.10" ,),
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- session = dict (argstr = "--session=%s" , extensions = None ,),
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- slice2vol_interp = dict (
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+ s2v_interp = dict (
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argstr = "--s2v_interp=%s" , min_ver = "5.0.11" , requires = ["mporder" ],
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),
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- slice2vol_lambda = dict (
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- argstr = "--s2v_lambda=%d" , min_ver = "5.0.11" , requires = ["mporder" ],
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- ),
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- slice2vol_niter = dict (
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- argstr = "--s2v_niter=%d" , min_ver = "5.0.11" , requires = ["mporder" ],
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+ s2v_lambda = dict (agstr = "--s2v_lambda" , min_ver = "5.0.11" , requires = ["mporder" ],),
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+ s2v_niter = dict (
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+ argstr = "--s2v_niter=%s" , min_ver = "5.0.11" , requires = ["mporder" ],
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),
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- slice_order = dict (
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+ session = dict (argstr = "--session=%s" , extensions = None ,),
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+ slm = dict (argstr = "--slm=%s" , usedefault = True ,),
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+ slspec = dict (
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argstr = "--slspec=%s" , min_ver = "5.0.11" , requires = ["mporder" ], xor = ["json" ],
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),
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- slm = dict (argstr = "--slm=%s" , usedefault = True ,),
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use_cuda = dict (),
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)
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inputs = Eddy .input_spec ()
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