File tree Expand file tree Collapse file tree 1 file changed +4
-4
lines changed Expand file tree Collapse file tree 1 file changed +4
-4
lines changed Original file line number Diff line number Diff line change @@ -132,10 +132,10 @@ def _run_interface(self, runtime):
132
132
b0 = np .array ([b0_im .get_data ()[msk > 0 ]]).T
133
133
args = np .hstack ((args , b0 ))
134
134
135
- if isdefined (self .inputs .bval ) and isdefined (self .inputs .bvec ):
135
+ if isdefined (self .inputs .in_bval ) and isdefined (self .inputs .in_bvec ):
136
136
# Load the gradient strengths and directions
137
- bvals = np .loadtxt (self .inputs .bval )
138
- bvecs = np .loadtxt (self .inputs .bvec ).T
137
+ bvals = np .loadtxt (self .inputs .in_bval )
138
+ bvecs = np .loadtxt (self .inputs .in_bvec ).T
139
139
140
140
# Place in Dipy's preferred format
141
141
gtab = gradient_table (bvals , bvecs )
@@ -144,7 +144,7 @@ def _run_interface(self, runtime):
144
144
self .inputs .bvalues )
145
145
146
146
np .savetxt (op .abspath (self .inputs .out_bvec ), gtab .bvecs .T )
147
- np .savetxt (op .abspath (self .inputs .out_bval ), gtab .bvals . T )
147
+ np .savetxt (op .abspath (self .inputs .out_bval ), gtab .bvals )
148
148
149
149
snr = self .inputs .snr
150
150
args = [tuple (np .hstack ((r , gtab , snr ))) for r in args ]
You can’t perform that action at this time.
0 commit comments